File: example1-seqnos.aln

package info (click to toggle)
ruby-bio 2.0.6-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 7,108 kB
  • sloc: ruby: 68,331; perl: 13; makefile: 11; sh: 1
file content (58 lines) | stat: -rw-r--r-- 3,656 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
CLUSTAL 2.0.9 multiple sequence alignment


query                      -MKNTLLKLGVCVSLLGITPFVSTISSVQAERTVEHKVIKNETGTISISQ 49
gi|115023|sp|P10425|       MKKNTLLKVGLCVSLLGTTQFVSTISSVQASQKVEQIVIKNETGTISISQ 50
gi|115030|sp|P25910|       -MKTVFILISMLFPVAVMAQKSVKIS-----------------DDISITQ 32
gi|2984094                 MGGFLFFFLLVLFSFSSEYPKHVKET------------------LRKITD 32
gi|282554|pir||S25844      -------------------------------------------MTVEVRE 7
                                                                         .: :

query                      LNKNVWVHTELGYFSG-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE 98
gi|115023|sp|P10425|       LNKNVWVHTELGYFNG-EAVPSNGLVLNTSKGLVLVDSSWDNKLTKELIE 99
gi|115030|sp|P25910|       LSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTEMLVN 82
gi|2984094                 RIYGVFGVYEQVSYEN-RGFISNAYFYVADDGVLVVDALSTYKLGKELIE 81
gi|282554|pir||S25844      VAEGVYAYEQAP---G-GWCVSNAGIVVGGDGALVVDTLSTIPRARRLAE 53
                               *:   .     .     **. .   ..   ::*:       . * :

query                      MVEKKFKKRVTDVIITHAHADRIGGMKTLKERGIKAHSTALTAELAKKNG 148
gi|115023|sp|P10425|       MVEKKFQKRVTDVIITHAHADRIGGITALKERGIKAHSTALTAELAKKSG 149
gi|115030|sp|P25910|       WVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKG 132
gi|2984094                 SIRSVTNKPIRFLVVTHYHTDHFYGAKAFREVGAEVIAHEWAFDYISQPS 131
gi|282554|pir||S25844      WVDKLAAGPGRTVVNTHFHGDHAFGNQVFAP-GTRIIAHEDMRSAMVTTG 102
                            : .        .: .* * *   *   :   * .  :     .     .

query                      --------------------YEEPLGDLQSVTNLKFGN----MKVETFYP 174
gi|115023|sp|P10425|       --------------------YEEPLGDLQTVTNLKFGN----TKVETFYP 175
gi|115030|sp|P25910|       --------------------LPVPEHGFTDSLTVSLDG----MPLQCYYL 158
gi|2984094                 SYNFFLARKKILKEHLEGTELTPPTITLTKNLNVYLQVGKEYKRFEVLHL 181
gi|282554|pir||S25844      ----LALTGLWPRVDWGEIELRPPNVTFRDRLTLHVGE----RQVELICV 144
                                                  *   :    .: .        .:    

query                      GKGHTEDNIVVWLPQYQILAGGCLVKSASSKDLGNVADAYVNEWSTSIEN 224
gi|115023|sp|P10425|       GKGHTEDNIVVWLPQYQILAGGCLVKSAEAKNLGNVADAYVNEWSTSIEN 225
gi|115030|sp|P25910|       GGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDK 208
gi|2984094                 CRAHTNGDIVVWIPDEKVLFSGDIVFDGRLPFLG---SGNSRTWLVCLDE 228
gi|282554|pir||S25844      GPAHTDHDVVVWLPEERVLFAGDVVMSGVTPFAL---FGSVAGTLAALDR 191
                             .*:  ::***:*  .:* .* :: .           .        ::.

query                      VLKRYGNINLVVPGHGEVGDR-----GLLLHTLDLLK------------- 256
gi|115023|sp|P10425|       MLKRYRNINLVVPGHGKVGDK-----GLLLHTLDLLK------------- 257
gi|115030|sp|P25910|       VKAKFPSARYVVPGHGDYGGT-----ELIEHTKQIVNQYIESTSKP---- 249
gi|2984094                 ILKMKPRILLPGHGEALIGEKKIK--EAVSWTRKYIKDLRETIRKLYEEG 276
gi|282554|pir||S25844      LAELEPEVVVGGHGPVAGPEVIDANRDYLRWVQRLAADAVDRRLTPLQAA 241
                           :            *              :  .                  

query                      --------------------------------------------------
gi|115023|sp|P10425|       --------------------------------------------------
gi|115030|sp|P25910|       --------------------------------------------------
gi|2984094                 --CDVECVRERINEELIKIDPSYAQVPVFF-NVNPVNAYYVYFEIENEIL 323
gi|282554|pir||S25844      RRADLGAFAGLLDAERLVANLHRAHEELLGGHVRDAMEIFAELVAYNGGQ 291
                                                                             

query                      ------
gi|115023|sp|P10425|       ------
gi|115030|sp|P25910|       ------
gi|2984094                 MGE--- 326
gi|282554|pir||S25844      LPTCLA 297