File: example1.aln

package info (click to toggle)
ruby-bio 2.0.6-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 7,108 kB
  • sloc: ruby: 68,331; perl: 13; makefile: 11; sh: 1
file content (58 lines) | stat: -rw-r--r-- 3,531 bytes parent folder | download | duplicates (8)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
CLUSTAL 2.0.9 multiple sequence alignment


query                      -MKNTLLKLGVCVSLLGITPFVSTISSVQAERTVEHKVIKNETGTISISQ
gi|115023|sp|P10425|       MKKNTLLKVGLCVSLLGTTQFVSTISSVQASQKVEQIVIKNETGTISISQ
gi|115030|sp|P25910|       -MKTVFILISMLFPVAVMAQKSVKIS-----------------DDISITQ
gi|2984094                 MGGFLFFFLLVLFSFSSEYPKHVKET------------------LRKITD
gi|282554|pir||S25844      -------------------------------------------MTVEVRE
                                                                         .: :

query                      LNKNVWVHTELGYFSG-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE
gi|115023|sp|P10425|       LNKNVWVHTELGYFNG-EAVPSNGLVLNTSKGLVLVDSSWDNKLTKELIE
gi|115030|sp|P25910|       LSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTEMLVN
gi|2984094                 RIYGVFGVYEQVSYEN-RGFISNAYFYVADDGVLVVDALSTYKLGKELIE
gi|282554|pir||S25844      VAEGVYAYEQAP---G-GWCVSNAGIVVGGDGALVVDTLSTIPRARRLAE
                               *:   .     .     **. .   ..   ::*:       . * :

query                      MVEKKFKKRVTDVIITHAHADRIGGMKTLKERGIKAHSTALTAELAKKNG
gi|115023|sp|P10425|       MVEKKFQKRVTDVIITHAHADRIGGITALKERGIKAHSTALTAELAKKSG
gi|115030|sp|P25910|       WVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKG
gi|2984094                 SIRSVTNKPIRFLVVTHYHTDHFYGAKAFREVGAEVIAHEWAFDYISQPS
gi|282554|pir||S25844      WVDKLAAGPGRTVVNTHFHGDHAFGNQVFAP-GTRIIAHEDMRSAMVTTG
                            : .        .: .* * *   *   :   * .  :     .     .

query                      --------------------YEEPLGDLQSVTNLKFGN----MKVETFYP
gi|115023|sp|P10425|       --------------------YEEPLGDLQTVTNLKFGN----TKVETFYP
gi|115030|sp|P25910|       --------------------LPVPEHGFTDSLTVSLDG----MPLQCYYL
gi|2984094                 SYNFFLARKKILKEHLEGTELTPPTITLTKNLNVYLQVGKEYKRFEVLHL
gi|282554|pir||S25844      ----LALTGLWPRVDWGEIELRPPNVTFRDRLTLHVGE----RQVELICV
                                                  *   :    .: .        .:    

query                      GKGHTEDNIVVWLPQYQILAGGCLVKSASSKDLGNVADAYVNEWSTSIEN
gi|115023|sp|P10425|       GKGHTEDNIVVWLPQYQILAGGCLVKSAEAKNLGNVADAYVNEWSTSIEN
gi|115030|sp|P25910|       GGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDK
gi|2984094                 CRAHTNGDIVVWIPDEKVLFSGDIVFDGRLPFLG---SGNSRTWLVCLDE
gi|282554|pir||S25844      GPAHTDHDVVVWLPEERVLFAGDVVMSGVTPFAL---FGSVAGTLAALDR
                             .*:  ::***:*  .:* .* :: .           .        ::.

query                      VLKRYGNINLVVPGHGEVGDR-----GLLLHTLDLLK-------------
gi|115023|sp|P10425|       MLKRYRNINLVVPGHGKVGDK-----GLLLHTLDLLK-------------
gi|115030|sp|P25910|       VKAKFPSARYVVPGHGDYGGT-----ELIEHTKQIVNQYIESTSKP----
gi|2984094                 ILKMKPRILLPGHGEALIGEKKIK--EAVSWTRKYIKDLRETIRKLYEEG
gi|282554|pir||S25844      LAELEPEVVVGGHGPVAGPEVIDANRDYLRWVQRLAADAVDRRLTPLQAA
                           :            *              :  .                  

query                      --------------------------------------------------
gi|115023|sp|P10425|       --------------------------------------------------
gi|115030|sp|P25910|       --------------------------------------------------
gi|2984094                 --CDVECVRERINEELIKIDPSYAQVPVFF-NVNPVNAYYVYFEIENEIL
gi|282554|pir||S25844      RRADLGAFAGLLDAERLVANLHRAHEELLGGHVRDAMEIFAELVAYNGGQ
                                                                             

query                      ------
gi|115023|sp|P10425|       ------
gi|115030|sp|P25910|       ------
gi|2984094                 MGE---
gi|282554|pir||S25844      LPTCLA