File: simple-A4.sim4

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seq1 = sample10-1.fst, 94 bp
seq2 = sample10-2.fst (genome1), 599 bp

>mrna1
>genome1

1-40  (145-184)   100% <-
41-94  (404-457)   94%

      0     .    :    .    :    .    :    .    :    .    :
      1 TTGTTTCCGTCGCTGGTTATTGTCTAGAACGCAAAAATAG         T
        ||||||||||||||||||||||||||||||||||||||||<<<...<<<|
    145 TTGTTTCCGTCGCTGGTTATTGTCTAGAACGCAAAAATAGCTG...TACT

     50     .    :    .    :    .    :    .    :    .    :
     42 CTACACATCACTAGCGTGGGTGGGCGGAAAGAGCAGCTCGCCACT CAAG
        ||||||||||||||| |||||||||||||-|||||||||||||||-||||
    405 CTACACATCACTAGCCTGGGTGGGCGGAA GAGCAGCTCGCCACTTCAAG

    100 
     91 CTAA
        ||||
    454 CTAA