File: simple2-A4.sim4

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seq1 = sample10-1.fst, 96 bp
seq2 = sample10-2.fst (genome1), 599 bp

>mrna1
>genome1

1-42  (143-184)   100% <-
43-96  (404-457)   94%

      0     .    :    .    :    .    :    .    :    .    :
      1 AGTTGTTTCCGTCGCTGGTTATTGTCTAGAACGCAAAAATAG        
        ||||||||||||||||||||||||||||||||||||||||||<<<...<<
    143 AGTTGTTTCCGTCGCTGGTTATTGTCTAGAACGCAAAAATAGCTG...TA

     50     .    :    .    :    .    :    .    :    .    :
     43  TCTACACATCACTAGCGTGGGTGGGCGGAAAGAGCAGCTCGCCACT CA
        <|||||||||||||||| |||||||||||||-|||||||||||||||-||
    403 CTCTACACATCACTAGCCTGGGTGGGCGGAA GAGCAGCTCGCCACTTCA

    100     .
     91 AGCTAA
        ||||||
    452 AGCTAA