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#
# test/unit/bio/data/test_aa.rb - Unit test for Bio::AminoAcid
#
# Copyright:: Copyright (C) 2005 Mitsuteru Nakao <n@bioruby.org>
# License:: The Ruby License
#
# $Id:$
#
# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 3,
'bioruby_test_helper.rb')).cleanpath.to_s
# libraries needed for the tests
require 'test/unit'
require 'bio/data/aa'
module Bio
class TestAAConstants < Test::Unit::TestCase
def test_bio_aminoacid
assert_equal('Ala', Bio::AminoAcid['A'])
end
end
class TestAA < Test::Unit::TestCase
def setup
@obj = Bio::AminoAcid.new
end
def test_13
assert_equal("Ala", @obj['A'])
end
def test_1n
assert_equal('alanine', @obj.name('A'))
end
def test_to_1_name
assert_equal('A', @obj.to_1('alanine'))
end
def test_to_1_3
assert_equal('A', @obj.to_1('Ala'))
end
def test_to_1_1
assert_equal('A', @obj.to_1('A'))
end
def test_to_3_name
assert_equal('Ala', @obj.to_3('alanine'))
end
def test_to_3_3
assert_equal('Ala', @obj.to_3('Ala'))
end
def test_to_3_1
assert_equal('Ala', @obj.to_3('A'))
end
def test_one2three
assert_equal('Ala', @obj.one2three('A'))
end
def test_three2one
assert_equal('A', @obj.three2one('Ala'))
end
def test_one2name
assert_equal('alanine', @obj.one2name('A'))
end
def test_name2one
assert_equal('A', @obj.name2one('alanine'))
end
def test_three2name
assert_equal('alanine', @obj.three2name('Ala'))
end
def test_name2three
assert_equal('Ala', @obj.name2three('alanine'))
end
def test_to_re
assert_equal(/[DNB][EQZ]ACDEFGHIKLMNPQRSTVWYU/, @obj.to_re('BZACDEFGHIKLMNPQRSTVWYU'))
end
end
end
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