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#
# test/unit/bio/db/test_qual.rb - Unit test for Bio::FastaNumericFormat
#
# Copyright:: Copyright (C) 2005 Mitsuteru Nakao <n@bioruby.org>
# License:: The Ruby License
#
# $Id:$
#
# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 3,
'bioruby_test_helper.rb')).cleanpath.to_s
# libraries needed for the tests
require 'test/unit'
require 'bio/db/fasta/qual'
module Bio
class TestFastaNumericFormat < Test::Unit::TestCase
DATA = [24, 15, 23, 29, 20, 13, 20, 21, 21, 23, 22, 25, 13, 22, 17, 15, 25, 27, 32, 26, 32, 29, 29, 25].freeze
def setup
text =<<END
>CRA3575282.F
24 15 23 29 20 13 20 21 21 23 22 25 13 22 17 15 25 27 32 26
32 29 29 25
END
@obj = Bio::FastaNumericFormat.new(text)
end
def test_entry
assert_equal(">CRA3575282.F\n24 15 23 29 20 13 20 21 21 23 22 25 13 22 17 15 25 27 32 26 \n32 29 29 25\n", @obj.entry)
end
def test_entry_id
assert_equal('CRA3575282.F', @obj.entry_id)
end
def test_definition
assert_equal('CRA3575282.F', @obj.definition)
end
def test_data
assert_equal(DATA, @obj.data)
end
def test_length
assert_equal(24, @obj.length)
end
def test_each
assert(@obj.each {|x| })
end
def test_arg
assert(@obj[0], '')
assert(@obj[-1], '')
end
def test_to_biosequence
assert_instance_of(Bio::Sequence, s = @obj.to_biosequence)
assert_equal(Bio::Sequence::Generic.new(''), s.seq)
assert_equal(DATA, s.quality_scores)
assert_equal(nil, s.quality_score_type)
end
end #class TestFastaNumericFormat
end #module Bio
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