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Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Description: Some build daemons have less than 6 cores, use the real number of
cores
--- a/test/test_test2.rb
+++ b/test/test_test2.rb
@@ -1,6 +1,7 @@
#!/usr/bin/env ruby
require 'helper'
+require 'etc'
class Test2CRBBlast < Test::Unit::TestCase
@@ -9,7 +10,7 @@
setup do
@blaster = CRB_Blast::CRB_Blast.new('test/query2.fasta', 'test/target2.fasta')
@dbs = @blaster.makedb
- @run = @blaster.run_blast(1e-5, 6, false)
+ @run = @blaster.run_blast(1e-5, Etc.nprocessors, false)
@load = @blaster.load_outputs
@recips = @blaster.find_reciprocals
@secondaries = @blaster.find_secondaries
--- a/test/test_test.rb
+++ b/test/test_test.rb
@@ -1,6 +1,7 @@
#!/usr/bin/env ruby
require 'helper'
+require 'etc'
class TestCRBBlast < Test::Unit::TestCase
@@ -11,7 +12,7 @@
target = File.join(File.dirname(__FILE__), 'target.fasta')
@blaster = CRB_Blast::CRB_Blast.new(query, target)
@dbs = @blaster.makedb
- @run = @blaster.run_blast(1e-5, 6, false)
+ @run = @blaster.run_blast(1e-5, Etc.nprocessors, false)
@load = @blaster.load_outputs
@recips = @blaster.find_reciprocals
@secondaries = @blaster.find_secondaries
--- a/test/test_test3.rb
+++ b/test/test_test3.rb
@@ -1,6 +1,7 @@
#!/usr/bin/env ruby
require 'helper'
+require 'etc'
class Test3CRBBlast < Test::Unit::TestCase
@@ -42,7 +43,7 @@
blaster = CRB_Blast::CRB_Blast.new(query, target)
dbs = blaster.makedb
- run = blaster.run_blast(1e-5, 6, false)
+ run = blaster.run_blast(1e-5, Etc.nprocessors, false)
load = blaster.load_outputs
recip_count = blaster.find_reciprocals
recips = blaster.reciprocals
|
