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Author: Michael R. Crusoe <crusoe@ucdavis.edu>
Description: we manage deps using packages; not bindeps
--- a/bin/crb-blast
+++ b/bin/crb-blast
@@ -6,7 +6,6 @@
require 'trollop'
require 'crb-blast'
-require 'bindeps'
opts = Trollop::options do
version CRB_Blast::VERSION::STRING.dup
@@ -58,10 +57,6 @@
Trollop::die :query, "must exist" if !File.exist?(opts[:query])
Trollop::die :target, "must exist" if !File.exist?(opts[:target])
-gem_dir = Gem.loaded_specs['crb-blast'].full_gem_path
-gem_deps = File.join(gem_dir, 'deps', 'deps.yaml')
-Bindeps.require gem_deps
-
blaster = CRB_Blast::CRB_Blast.new(opts.query, opts.target)
print "Making blast databases..." if opts.verbose
dbs = blaster.makedb
--- a/test/test_bin.rb
+++ b/test/test_bin.rb
@@ -7,7 +7,7 @@
context 'crb-blast' do
should 'run binary' do
- cmd = "bundle exec bin/crb-blast --help"
+ cmd = "bin/crb-blast --help"
runner = CRB_Blast::Cmd.new(cmd)
runner.run
assert runner.status.success?
--- a/crb-blast.gemspec
+++ b/crb-blast.gemspec
@@ -19,7 +19,6 @@
gem.add_dependency 'bio', '~> 1.4', '>= 1.4.3'
gem.add_dependency 'fixwhich', '~> 1.0', '>= 1.0.2'
gem.add_dependency 'threach', '~> 0.2', '>= 0.2.0'
- gem.add_dependency 'bindeps', '~> 1.0', '>= 1.0.3'
gem.add_development_dependency 'rake', '~> 10.3', '>= 10.3.2'
gem.add_development_dependency 'turn', '~> 0.9', '>= 0.9.7'
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