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Source: ruby-fix-trinity-output
Section: ruby
Priority: optional
Maintainer: Debian Ruby Extras Maintainers <pkg-ruby-extras-maintainers@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@ucdavis.edu>
Build-Depends: debhelper (>= 9~),
gem2deb,
rake,
ruby-trollop (>= 2.0),
help2man,
ruby-shoulda-context
Standards-Version: 3.9.6
Vcs-Git: git://anonscm.debian.org/pkg-ruby-extras/ruby-fix-trinity-output.git
Vcs-Browser: https://anonscm.debian.org/cgit/pkg-ruby-extras/ruby-fix-trinity-output.git
Homepage: http://rubygems.org/gems/fix-trinity-output
Testsuite: autopkgtest-pkg-ruby
XS-Ruby-Versions: all
Package: ruby-fix-trinity-output
Architecture: all
XB-Ruby-Versions: ${ruby:Versions}
Depends: ruby | ruby-interpreter,
ruby-trollop (>= 2.0),
${misc:Depends},
${shlibs:Depends}
Description: Fix output fastq files from trinityrnaseq
trinityrnaseq outputs fastq files that have been 'corrected'
.
Unfortunately these files are no longer properly paired and therefore can't be
used in most aligners such as bowtie2 and snap-aligner. This script attempts
to fix that and produce 2 properly paired fastq files and a fastq file
containing single reads
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