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ruby-fix-trinity-output 1.0.0-1
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  • size: 224 kB
  • ctags: 6
  • sloc: ruby: 148; makefile: 14
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Source: ruby-fix-trinity-output
Section: ruby
Priority: optional
Maintainer: Debian Ruby Extras Maintainers <pkg-ruby-extras-maintainers@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@ucdavis.edu>
Build-Depends: debhelper (>= 9~),
               gem2deb,
               rake,
               ruby-trollop (>= 2.0),
               help2man,
               ruby-shoulda-context
Standards-Version: 3.9.6
Vcs-Git: git://anonscm.debian.org/pkg-ruby-extras/ruby-fix-trinity-output.git
Vcs-Browser: https://anonscm.debian.org/cgit/pkg-ruby-extras/ruby-fix-trinity-output.git
Homepage: http://rubygems.org/gems/fix-trinity-output
Testsuite: autopkgtest-pkg-ruby
XS-Ruby-Versions: all

Package: ruby-fix-trinity-output
Architecture: all
XB-Ruby-Versions: ${ruby:Versions}
Depends: ruby | ruby-interpreter,
         ruby-trollop (>= 2.0),
         ${misc:Depends},
         ${shlibs:Depends}
Description: Fix output fastq files from trinityrnaseq
 trinityrnaseq outputs fastq files that have been 'corrected'
 .
 Unfortunately these files are no longer properly paired and therefore can't be
 used in most aligners such as bowtie2 and snap-aligner. This script attempts
 to fix that and produce 2 properly paired fastq files and a fastq file
 containing single reads