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extern crate petgraph;
use std::collections::HashSet;
use std::fs::File;
use std::io::prelude::*;
use petgraph::graph::{edge_index, node_index};
use petgraph::prelude::*;
use petgraph::EdgeType;
use petgraph::algo::{
is_isomorphic, is_isomorphic_matching, is_isomorphic_subgraph, subgraph_isomorphisms_iter,
};
/// Petersen A and B are isomorphic
///
/// http://www.dharwadker.org/tevet/isomorphism/
const PETERSEN_A: &str = "
0 1 0 0 1 0 1 0 0 0
1 0 1 0 0 0 0 1 0 0
0 1 0 1 0 0 0 0 1 0
0 0 1 0 1 0 0 0 0 1
1 0 0 1 0 1 0 0 0 0
0 0 0 0 1 0 0 1 1 0
1 0 0 0 0 0 0 0 1 1
0 1 0 0 0 1 0 0 0 1
0 0 1 0 0 1 1 0 0 0
0 0 0 1 0 0 1 1 0 0
";
const PETERSEN_B: &str = "
0 0 0 1 0 1 0 0 0 1
0 0 0 1 1 0 1 0 0 0
0 0 0 0 0 0 1 1 0 1
1 1 0 0 0 0 0 1 0 0
0 1 0 0 0 0 0 0 1 1
1 0 0 0 0 0 1 0 1 0
0 1 1 0 0 1 0 0 0 0
0 0 1 1 0 0 0 0 1 0
0 0 0 0 1 1 0 1 0 0
1 0 1 0 1 0 0 0 0 0
";
/// An almost full set, isomorphic
const FULL_A: &str = "
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 0 1 1 1 0 1
1 1 1 1 1 1 1 1 1 1
";
const FULL_B: &str = "
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 0 1 1 1 0 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
";
/// Praust A and B are not isomorphic
const PRAUST_A: &str = "
0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0
0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0
0 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0
0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0
1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0
0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0
0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0
0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1
0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0
0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0
0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1
0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0
0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1
0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 1
0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1
0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0
";
const PRAUST_B: &str = "
0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0
0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1
0 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0
0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0
1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0
0 1 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0
0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0
0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0
0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1
0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0
0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1
0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0
0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 1 0
0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1
0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1
0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0
";
const G1U: &str = "
0 1 1 0 1
1 0 1 0 0
1 1 0 0 0
0 0 0 0 0
1 0 0 0 0
";
const G2U: &str = "
0 1 0 1 0
1 0 0 1 1
0 0 0 0 0
1 1 0 0 0
0 1 0 0 0
";
const G4U: &str = "
0 1 1 0 1
1 0 0 1 0
1 0 0 0 0
0 1 0 0 0
1 0 0 0 0
";
const G1D: &str = "
0 1 1 0 1
0 0 1 0 0
0 0 0 0 0
0 0 0 0 0
0 0 0 0 0
";
const G4D: &str = "
0 1 1 0 1
0 0 0 1 0
0 0 0 0 0
0 0 0 0 0
0 0 0 0 0
";
// G8 1,2 are not iso
const G8_1: &str = "
0 1 1 0 0 1 1 1
1 0 1 0 1 0 1 1
1 1 0 1 0 0 1 1
0 0 1 0 1 1 1 1
0 1 0 1 0 1 1 1
1 0 0 1 1 0 1 1
1 1 1 1 1 1 0 1
1 1 1 1 1 1 1 0
";
const G8_2: &str = "
0 1 0 1 0 1 1 1
1 0 1 0 1 0 1 1
0 1 0 1 0 1 1 1
1 0 1 0 1 0 1 1
0 1 0 1 0 1 1 1
1 0 1 0 1 0 1 1
1 1 1 1 1 1 0 1
1 1 1 1 1 1 1 0
";
// G3 1,2 are not iso
const G3_1: &str = "
0 1 0
1 0 1
0 1 0
";
const G3_2: &str = "
0 1 1
1 0 1
1 1 0
";
// Non-isomorphic due to selfloop difference
const S1: &str = "
1 1 1
1 0 1
1 0 0
";
const S2: &str = "
1 1 1
0 1 1
1 0 0
";
/// Parse a text adjacency matrix format into a directed graph
fn parse_graph<Ty: EdgeType>(s: &str) -> Graph<(), (), Ty> {
let mut gr = Graph::with_capacity(0, 0);
let s = s.trim();
let lines = s.lines().filter(|l| !l.is_empty());
for (row, line) in lines.enumerate() {
for (col, word) in line.split(' ').filter(|s| !s.is_empty()).enumerate() {
let has_edge = word.parse::<i32>().unwrap();
assert!(has_edge == 0 || has_edge == 1);
if has_edge == 0 {
continue;
}
while col >= gr.node_count() || row >= gr.node_count() {
gr.add_node(());
}
gr.update_edge(node_index(row), node_index(col), ());
}
}
gr
}
fn str_to_graph(s: &str) -> Graph<(), (), Undirected> {
parse_graph(s)
}
fn str_to_digraph(s: &str) -> Graph<(), (), Directed> {
parse_graph(s)
}
/// Parse a file in adjacency matrix format into a directed graph
fn graph_from_file(path: &str) -> Graph<(), (), Directed> {
let mut f = File::open(path).expect("file not found");
let mut contents = String::new();
f.read_to_string(&mut contents)
.expect("failed to read from file");
parse_graph(&contents)
}
/*
fn graph_to_ad_matrix<N, E, Ty: EdgeType>(g: &Graph<N,E,Ty>)
{
let n = g.node_count();
for i in (0..n) {
for j in (0..n) {
let ix = NodeIndex::new(i);
let jx = NodeIndex::new(j);
let out = match g.find_edge(ix, jx) {
None => "0",
Some(_) => "1",
};
print!("{} ", out);
}
println!("");
}
}
*/
#[test]
fn petersen_iso() {
// The correct isomorphism is
// 0 => 0, 1 => 3, 2 => 1, 3 => 4, 5 => 2, 6 => 5, 7 => 7, 8 => 6, 9 => 8, 4 => 9
let peta = str_to_digraph(PETERSEN_A);
let petb = str_to_digraph(PETERSEN_B);
/*
println!("{:?}", peta);
graph_to_ad_matrix(&peta);
println!("");
graph_to_ad_matrix(&petb);
*/
assert!(petgraph::algo::is_isomorphic(&peta, &petb));
}
#[test]
fn petersen_undir_iso() {
// The correct isomorphism is
// 0 => 0, 1 => 3, 2 => 1, 3 => 4, 5 => 2, 6 => 5, 7 => 7, 8 => 6, 9 => 8, 4 => 9
let peta = str_to_digraph(PETERSEN_A);
let petb = str_to_digraph(PETERSEN_B);
assert!(petgraph::algo::is_isomorphic(&peta, &petb));
}
#[test]
fn full_iso() {
let a = str_to_graph(FULL_A);
let b = str_to_graph(FULL_B);
assert!(petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
#[cfg_attr(miri, ignore = "Takes too long to run in Miri")]
fn praust_dir_no_iso() {
let a = str_to_digraph(PRAUST_A);
let b = str_to_digraph(PRAUST_B);
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
#[cfg_attr(miri, ignore = "Takes too long to run in Miri")]
fn praust_undir_no_iso() {
let a = str_to_graph(PRAUST_A);
let b = str_to_graph(PRAUST_B);
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn coxeter_di_iso() {
// The correct isomorphism is
let a = str_to_digraph(COXETER_A);
let b = str_to_digraph(COXETER_B);
assert!(petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn coxeter_undi_iso() {
// The correct isomorphism is
let a = str_to_graph(COXETER_A);
let b = str_to_graph(COXETER_B);
assert!(petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn g14_dir_not_iso() {
let a = str_to_digraph(G1D);
let b = str_to_digraph(G4D);
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn g14_undir_not_iso() {
let a = str_to_digraph(G1U);
let b = str_to_digraph(G4U);
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn g12_undir_iso() {
let a = str_to_digraph(G1U);
let b = str_to_digraph(G2U);
assert!(petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn g3_not_iso() {
let a = str_to_digraph(G3_1);
let b = str_to_digraph(G3_2);
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn g8_not_iso() {
let a = str_to_digraph(G8_1);
let b = str_to_digraph(G8_2);
assert_eq!(a.edge_count(), b.edge_count());
assert_eq!(a.node_count(), b.node_count());
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn s12_not_iso() {
let a = str_to_digraph(S1);
let b = str_to_digraph(S2);
assert_eq!(a.edge_count(), b.edge_count());
assert_eq!(a.node_count(), b.node_count());
assert!(!petgraph::algo::is_isomorphic(&a, &b));
}
#[test]
fn iso1() {
let mut g0 = Graph::<_, ()>::new();
let mut g1 = Graph::<_, ()>::new();
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
// very simple cases
let a0 = g0.add_node(0);
let a1 = g1.add_node(0);
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
let b0 = g0.add_node(1);
let b1 = g1.add_node(1);
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
let _ = g0.add_node(2);
assert!(!petgraph::algo::is_isomorphic(&g0, &g1));
let _ = g1.add_node(2);
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
g0.add_edge(a0, b0, ());
assert!(!petgraph::algo::is_isomorphic(&g0, &g1));
g1.add_edge(a1, b1, ());
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
}
#[test]
fn iso2() {
let mut g0 = Graph::<_, ()>::new();
let mut g1 = Graph::<_, ()>::new();
let a0 = g0.add_node(0);
let a1 = g1.add_node(0);
let b0 = g0.add_node(1);
let b1 = g1.add_node(1);
let c0 = g0.add_node(2);
let c1 = g1.add_node(2);
g0.add_edge(a0, b0, ());
g1.add_edge(c1, b1, ());
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
// a -> b
// a -> c
// vs.
// c -> b
// c -> a
g0.add_edge(a0, c0, ());
g1.add_edge(c1, a1, ());
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
// add
// b -> c
// vs
// b -> a
let _ = g0.add_edge(b0, c0, ());
let _ = g1.add_edge(b1, a1, ());
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
let d0 = g0.add_node(3);
let d1 = g1.add_node(3);
let e0 = g0.add_node(4);
let e1 = g1.add_node(4);
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
// add
// b -> e -> d
// vs
// b -> d -> e
g0.add_edge(b0, e0, ());
g0.add_edge(e0, d0, ());
g1.add_edge(b1, d1, ());
g1.add_edge(d1, e1, ());
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
}
#[test]
fn iso_matching() {
let g0 = Graph::<(), _>::from_edges([(0, 0, 1), (0, 1, 2), (0, 2, 3), (1, 2, 4)]);
let mut g1 = g0.clone();
g1[edge_index(0)] = 0;
assert!(!is_isomorphic_matching(
&g0,
&g1,
|x, y| x == y,
|x, y| x == y
));
let mut g2 = g0.clone();
g2[edge_index(1)] = 0;
assert!(!is_isomorphic_matching(
&g0,
&g2,
|x, y| x == y,
|x, y| x == y
));
}
#[test]
fn iso_100n_100e() {
let g0 = str_to_digraph(include_str!("res/graph_100n_100e.txt"));
let g1 = str_to_digraph(include_str!("res/graph_100n_100e_iso.txt"));
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
}
#[test]
#[cfg_attr(miri, ignore = "Too large for Miri")]
fn iso_large() {
let g0 = graph_from_file("tests/res/graph_1000n_1000e.txt");
let g1 = graph_from_file("tests/res/graph_1000n_1000e.txt");
assert!(petgraph::algo::is_isomorphic(&g0, &g1));
}
// isomorphism isn't correct for multigraphs.
// Keep this testcase to document how
#[should_panic]
#[test]
fn iso_multigraph_failure() {
let g0 = Graph::<(), ()>::from_edges([(0, 0), (0, 0), (0, 1), (1, 1), (1, 1), (1, 0)]);
let g1 = Graph::<(), ()>::from_edges([(0, 0), (0, 1), (0, 1), (1, 1), (1, 0), (1, 0)]);
assert!(!is_isomorphic(&g0, &g1));
}
#[test]
#[cfg_attr(miri, ignore = "Takes too long to run in Miri")]
fn iso_subgraph() {
let g0 = Graph::<(), ()>::from_edges([(0, 1), (1, 2), (2, 0)]);
let g1 = Graph::<(), ()>::from_edges([(0, 1), (1, 2), (2, 0), (2, 3), (0, 4)]);
assert!(!is_isomorphic(&g0, &g1));
assert!(is_isomorphic_subgraph(&g0, &g1));
}
#[test]
fn iter_subgraph_empty() {
let a = Graph::<(), ()>::new();
let b = Graph::<(), ()>::from_edges([(0, 1), (1, 2), (2, 0)]);
let a_ref = &a;
let b_ref = &b;
let mut node_match = { |x: &(), y: &()| x == y };
let mut edge_match = { |x: &(), y: &()| x == y };
let mut mappings =
subgraph_isomorphisms_iter(&a_ref, &b_ref, &mut node_match, &mut edge_match).unwrap();
assert_eq!(mappings.next(), Some(vec![]));
assert_eq!(mappings.next(), None);
}
#[test]
#[cfg_attr(miri, ignore = "Takes too long to run in Miri")]
fn iter_subgraph() {
let a = Graph::<(), ()>::from_edges([(0, 1), (1, 2), (2, 0)]);
let b = Graph::<(), ()>::from_edges([(0, 1), (1, 2), (2, 0), (2, 3), (0, 4)]);
let a_ref = &a;
let b_ref = &b;
let mut node_match = { |x: &(), y: &()| x == y };
let mut edge_match = { |x: &(), y: &()| x == y };
let mappings =
subgraph_isomorphisms_iter(&a_ref, &b_ref, &mut node_match, &mut edge_match).unwrap();
// Verify the iterator returns the expected mappings
let expected_mappings: Vec<Vec<usize>> = vec![vec![0, 1, 2], vec![1, 2, 0], vec![2, 0, 1]];
for mapping in mappings {
assert!(expected_mappings.contains(&mapping))
}
// Verify all the mappings from the iterator are different
let a = str_to_digraph(COXETER_A);
let b = str_to_digraph(COXETER_B);
let a_ref = &a;
let b_ref = &b;
let mut unique = HashSet::new();
assert!(
subgraph_isomorphisms_iter(&a_ref, &b_ref, &mut node_match, &mut edge_match)
.unwrap()
.all(|x| unique.insert(x))
);
// The iterator should return None for graphs that are not isomorphic
let a = str_to_digraph(G8_1);
let b = str_to_digraph(G8_2);
let a_ref = &a;
let b_ref = &b;
assert!(
subgraph_isomorphisms_iter(&a_ref, &b_ref, &mut node_match, &mut edge_match)
.unwrap()
.next()
.is_none()
);
// https://github.com/petgraph/petgraph/issues/534
let mut g = Graph::<String, ()>::new();
let e1 = g.add_node("l1".to_string());
let e2 = g.add_node("l2".to_string());
g.add_edge(e1, e2, ());
let e3 = g.add_node("l3".to_string());
g.add_edge(e2, e3, ());
let e4 = g.add_node("l4".to_string());
g.add_edge(e3, e4, ());
let mut sub = Graph::<String, ()>::new();
let e3 = sub.add_node("l3".to_string());
let e4 = sub.add_node("l4".to_string());
sub.add_edge(e3, e4, ());
let mut node_match = { |x: &String, y: &String| x == y };
let mut edge_match = { |x: &(), y: &()| x == y };
assert_eq!(
subgraph_isomorphisms_iter(&&sub, &&g, &mut node_match, &mut edge_match)
.unwrap()
.collect::<Vec<_>>(),
vec![vec![2, 3]]
);
}
/// Isomorphic pair
const COXETER_A: &str = "
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1
1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1
0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
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