File: run-unit-test

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salmid 0.1.23-5
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#!/bin/bash
set -e

pkg=salmid

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

unxz SRX11266476.fastq.xz
SalmID -i SRX11266476.fastq > output 
[ -s "output" ] && echo "PASS Test"