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#!/usr/bin/make -f
# DH_VERBOSE := 1
DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
# Fails to build when trying to enhance hardening
export DEB_BUILD_MAINT_OPTIONS = hardening=+bindnow
%:
dh $@ --with sphinxdoc --parallel
override_dh_auto_configure:
cp -v debian/rapmap/RapMap*.h* \
debian/rapmap/Boo???.hpp \
debian/rapmap/IndexHeader.hpp \
debian/rapmap/HitManager.hpp \
debian/rapmap/JFRaw.hpp \
debian/rapmap/SA*.hpp \
debian/rapmap/kseq.h \
debian/rapmap/SpinLock.hpp \
debian/rapmap/ScopedTimer.hpp \
debian/rapmap/bit_*.h \
debian/rapmap/rank9b.h \
debian/rapmap/macros.h \
debian/rapmap/PairAlignmentFormatter.hpp \
debian/rapmap/SingleAlignmentFormatter.hpp \
include/
cp -v debian/rapmap/bit_array.c \
debian/rapmap/rank9b.cpp \
debian/rapmap/RapMap*.cpp \
debian/rapmap/HitManager.cpp \
src/
dh_auto_configure
override_dh_auto_build:
dh_auto_build
mv doc/source/license.rst doc/ # unused
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bhtml doc/source doc/build/html
mv doc/license.rst doc/source/
cd obj*/src && \
help2man --no-discard-stderr --no-info --name="highly-accurate, transcript-level quantification estimates from RNA-seq data"\
./salmon > ../../debian/salmon.1 && \
for option in index quant swim; do help2man --no-discard-stderr \
--version-string="${VERSION}" --no-info "./salmon --no-version-check $${option}" \
--include=../../debian/salmon-$${option}-man-include \
> ../../debian/salmon-$${option}.1; done
# tests may fail when run out of order or concurrently
override_dh_auto_test:
DEB_BUILD_OPTIONS="parallel=1" dh_auto_test
override_dh_auto_clean:
dh_auto_clean
rm -f include/RapMap*.h* \
include/Boo???.hpp \
include/IndexHeader.hpp \
include/HitManager.hpp \
include/JFRaw.hpp \
include/SA*.hpp \
include/kseq.h \
include/bit_*.h \
include/rank9b.h \
include/macros.h \
include/SpinLock.hpp \
include/ScopedTimer.hpp \
include/PairAlignmentFormatter.hpp \
include/SingleAlignmentFormatter.hpp
rm -f src/bit_array.c \
src/rank9b.cpp \
src/RapMap*.cpp \
src/HitManager.cpp
rm -f debian/*.1
rm -Rf sample_data
cd doc && $(MAKE) clean
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