1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
# image: COMBINE-lab/salmon
# This dockerfile is based on the one created by
# Titus Brown (available at https://github.com/ctb/2015-docker-building/blob/master/salmon/Dockerfile)
FROM ubuntu:15.10
MAINTAINER salmon.maintainer@gmail.com
ENV PACKAGES git gcc make g++ cmake libboost-all-dev liblzma-dev libbz2-dev \
ca-certificates zlib1g-dev curl unzip autoconf
ENV SALMON_VERSION 0.7.1
# salmon binary will be installed in /home/salmon/bin/salmon
### don't modify things below here for version updates etc.
WORKDIR /home
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
RUN curl -k -L https://github.com/COMBINE-lab/salmon/archive/v${SALMON_VERSION}.tar.gz -o salmon-v${SALMON_VERSION}.tar.gz && \
tar xzf salmon-v${SALMON_VERSION}.tar.gz && \
cd salmon-${SALMON_VERSION} && \
mkdir build && \
cd build && \
cmake .. && make && make install
ENV PATH /home/salmon-${SALMON_VERSION}/bin:${PATH}
|
