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#ifndef COLLAPSED_EM_OPTIMIZER_HPP
#define COLLAPSED_EM_OPTIMIZER_HPP
#include <unordered_map>
#include <functional>
#include "tbb/atomic.h"
#include "tbb/task_scheduler_init.h"
#include "ReadExperiment.hpp"
#include "SalmonOpts.hpp"
#include "cuckoohash_map.hh"
#include "Eigen/Dense"
class BootstrapWriter;
class CollapsedEMOptimizer {
public:
using VecType = std::vector<tbb::atomic<double>>;
using SerialVecType = std::vector<double>;
CollapsedEMOptimizer();
template <typename ExpT>
bool optimize(ExpT& readExp,
SalmonOpts& sopt,
double tolerance = 0.01,
uint32_t maxIter = 1000);
template <typename ExpT>
bool gatherBootstraps(
ExpT& readExp,
SalmonOpts& sopt,
std::function<bool(const std::vector<double>&)>& writeBootstrap,
double relDiffTolerance,
uint32_t maxIter);
};
#endif // COLLAPSED_EM_OPTIMIZER_HPP
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