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/**
>HEADER
Copyright (c) 2013 Rob Patro robp@cs.cmu.edu
This file is part of Sailfish.
Sailfish is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Sailfish is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Sailfish. If not, see <http://www.gnu.org/licenses/>.
<HEADER
**/
#ifndef __PARTITION_REFINER_HPP__
#define __PARTITION_REFINER_HPP__
#include <vector>
#include "LookUpTableUtils.hpp"
class PartitionRefiner {
public:
PartitionRefiner(LUTTools::KmerID numElem);
void splitWith(std::vector<LUTTools::KmerID> splitter);
void relabel();
const std::vector<LUTTools::KmerID>& partitionMembership();
private:
LUTTools::KmerID numElem_;
std::vector<LUTTools::KmerID> membership_;
LUTTools::KmerID maxSetIdx_;
};
#endif // __PARTITION_REFINER_HPP__
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