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echo -e "Preparing binary release\n=====================\n"
# create the binary directory
mkdir $HOME/SalmonBeta-latest_ubuntu-12.04
mkdir $HOME/SalmonBeta-latest_ubuntu-12.04/bin
mkdir $HOME/SalmonBeta-latest_ubuntu-12.04/lib
# copy over the executable and Intel TBB libraries
echo -e "Copying over the binary and Intel TBB libraries\n"
cp $TRAVIS_BUILD_DIR/bin/salmon $HOME/SalmonBeta-latest_ubuntu-12.04/bin/
cp $TRAVIS_BUILD_DIR/lib/libtbb* $HOME/SalmonBeta-latest_ubuntu-12.04/lib/
# copy other dependencies (shared libraries)
echo -e "Copying over other shared library dependencies\n"
bash $TRAVIS_BUILD_DIR/scripts/cpld.bash $TRAVIS_BUILD_DIR/bin/salmon $HOME/SalmonBeta-latest_ubuntu-12.04/lib/
echo -e "Removing dangerous dependencies\n"
rm $HOME/SalmonBeta-latest_ubuntu-12.04/lib/libc.so.6
rm $HOME/SalmonBeta-latest_ubuntu-12.04/lib/ld-linux-x86-64.so.2
rm $HOME/SalmonBeta-latest_ubuntu-12.04/lib/libdl.so.2
rm $HOME/SalmonBeta-latest_ubuntu-12.04/lib/libpthread*.so.*
# now make the tarball
echo -e "Making the tarball\n"
cd $HOME
tar czvf SalmonBeta-latest_ubuntu-12.04.tar.gz SalmonBeta-latest_ubuntu-12.04
echo -e "Pushing the tarball to GitHub\n"
# Since it's currently unclear to me how to overwrite an asset via the GitHub
# API, the following code deletes the old asset, and uploads the new one in its place
# Get the previous asset id of the tarball
echo -e "Getting previous asset ID\n"
ASSETID=`curl -s -X GET https://api.github.com/repos/COMBINE-lab/salmon/releases/1263754/assets | grep "\"id" | head -1 | awk '{gsub(/,$/,""); print $2}'`
# Delete the previous tarball
echo -e "Deleting previous asset\n"
curl -X DELETE -H "Authorization: token ${SALMON_PUSH_KEY}" https://api.github.com/repos/COMBINE-lab/salmon/releases/assets/$ASSETID
# Upload the new tarball
echo -e "Uploading new asset\n"
curl -X POST --data-binary "@SalmonBeta-latest_ubuntu-12.04.tar.gz" https://uploads.github.com/repos/COMBINE-lab/salmon/releases/1263754/assets?name=SalmonBeta-latest_ubuntu-12.04.tar.gz --header "Content-Type:application/gzip" -H "Authorization: token ${SALMON_PUSH_KEY}"
echo -e "Done!\n"
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