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#ifndef COLLAPSED_GIBBS_SAMPLER_HPP
#define COLLAPSED_GIBBS_SAMPLER_HPP
#include <functional>
#include <unordered_map>
#include "SalmonOpts.hpp"
#include "Eigen/Dense"
#include "cuckoohash_map.hh"
class BootstrapWriter;
class CollapsedGibbsSampler {
public:
using VecType = std::vector<double>;
CollapsedGibbsSampler();
template <typename ExpT>
bool sample(ExpT& readExp, SalmonOpts& sopt,
std::function<bool(const std::vector<double>&)>& writeBootstrap,
uint32_t numSamples = 500);
/*
template <typename ExpT>
bool sampleMultipleChains(ExpT& readExp,
SalmonOpts& sopt,
std::function<bool(const std::vector<double>&)>& writeBootstrap,
uint32_t numSamples = 500);
*/
};
#endif // COLLAPSED_EM_OPTIMIZER_HPP
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