1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
/**
>HEADER
Copyright (c) 2013 Rob Patro robp@cs.cmu.edu
This file is part of Sailfish.
Sailfish is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Sailfish is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Sailfish. If not, see <http://www.gnu.org/licenses/>.
<HEADER
**/
#ifndef COMMON_TYPES_HPP
#define COMMON_TYPES_HPP
#include <array>
#include <cstdint>
namespace Sailfish {
/*
struct Kmer {
uint64_t kmer;
};
struct Index {
uint64_t index;
};
*/
struct TranscriptFeatures {
std::string name;
size_t length;
double gcContent;
std::array<uint64_t, 16> diNucleotides;
};
} // namespace Sailfish
#endif // COMMON_TYPES_HPP
|
