1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
|
#ifndef __SALMON_MAPPING_STATISTICS__
#define __SALMON_MAPPING_STATISTICS__
#include <atomic>
// class to collect statistics we may want about mapping / alignment
class MappingStatistics {
public:
std::atomic<uint64_t> numOrphansRescued{0};
// The number of mappings that were filtered due to alignment score
std::atomic<uint64_t> numMappingsFiltered{0};
std::atomic<uint64_t> numFragmentsFiltered{0};
std::atomic<uint64_t> numDecoyFragments{0};
std::atomic<uint64_t> numDovetails{0};
};
#endif // __SALMON_MAPPING_STATISTICS__
|
