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Source: sambamba
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-dlang,
libbiod-dev,
libhts-dev (>= 1.10.2-4),
meson (>= 0.48),
pkg-config,
python3,
shunit2 <!nocheck>,
zlib1g-dev,
# used by libhts and explicitly referenced in build instruction
liblz4-dev,
libcurl4-gnutls-dev | libcurl-dev,
libssl-dev,
libbz2-dev,
libdeflate-dev,
liblzma-dev
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/sambamba
Vcs-Git: https://salsa.debian.org/med-team/sambamba.git
Homepage: https://github.com/lomereiter/sambamba
Rules-Requires-Root: no
Package: sambamba
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends}
Description: tools for working with SAM/BAM data
Sambamba positions itself as a performant alternative
to samtools and provides tools for
* Powerful filtering with sambamba view --filter
* Picard-like SAM header merging in the merge tool
* Optional for operations on whole BAMs
* Fast copying of a region to a new file with the slice tool
* Duplicate marking/removal, using the Picard criteria
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