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/*
This file is part of Sambamba.
Copyright © 2012-2017 Pjotr Prins <pjotr.prins@thebird.nl>
Sambamba is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
Sambamba is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
/**
Module for streaming unpacked (BAM) blocks
*/
module bio.std.experimental.hts.unpack;
import std.stdio;
import bio.std.experimental.hts.bgzf;
int unpack_bams(string[] infns, File outfile) {
foreach (string fn; infns) {
foreach (ubyte[] read; BgzfBlocks(fn)) {
outfile.rawWrite(read); // raw unpacking
}
}
return 0;
}
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