File: issue_193_expected_output.txt

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REF	POS	COV	A	C	G	T	DEL	REFSKIP	SAMPLE
SuperContig_95000040	0	12	12	0	0	0	0	0	*
SuperContig_95000040	1	12	0	0	0	12	0	0	*
SuperContig_95000040	2	12	0	12	0	0	0	0	*
SuperContig_95000040	3	12	0	12	0	0	0	0	*
SuperContig_95000040	4	12	0	12	0	0	0	0	*
SuperContig_95000040	5	12	0	0	0	12	0	0	*
SuperContig_95000040	6	12	0	12	0	0	0	0	*
SuperContig_95000040	7	12	12	0	0	0	0	0	*
SuperContig_95000040	8	12	0	12	0	0	0	0	*
SuperContig_95000040	9	12	0	0	0	12	0	0	*
SuperContig_95000040	10	12	0	0	0	12	0	0	*
SuperContig_95000040	11	12	0	12	0	0	0	0	*
SuperContig_95000040	12	12	0	12	0	0	0	0	*
SuperContig_95000040	13	12	0	12	0	0	0	0	*
SuperContig_95000040	14	12	0	0	0	12	0	0	*
SuperContig_95000040	15	12	0	0	12	0	0	0	*
SuperContig_95000040	16	12	0	12	0	0	0	0	*
SuperContig_95000040	17	12	12	0	0	0	0	0	*
SuperContig_95000040	18	12	12	0	0	0	0	0	*
SuperContig_95000040	19	12	0	12	0	0	0	0	*
SuperContig_95000040	20	12	12	0	0	0	0	0	*
SuperContig_95000040	21	13	0	13	0	0	0	0	*
SuperContig_95000040	22	13	0	13	0	0	0	0	*
SuperContig_95000040	23	13	0	0	0	13	0	0	*
SuperContig_95000040	24	13	0	0	0	13	0	0	*
SuperContig_95000040	25	13	0	0	0	13	0	0	*
SuperContig_95000040	26	13	13	0	0	0	0	0	*
SuperContig_95000040	27	14	0	14	0	0	0	0	*
SuperContig_95000040	28	14	0	14	0	0	0	0	*
SuperContig_95000040	29	14	0	14	0	0	0	0	*
SuperContig_95000040	30	14	0	14	0	0	0	0	*
SuperContig_95000040	31	14	0	0	14	0	0	0	*
SuperContig_95000040	32	14	0	0	0	14	0	0	*
SuperContig_95000040	33	14	0	0	14	0	0	0	*
SuperContig_95000040	34	14	0	14	0	0	0	0	*
SuperContig_95000040	35	14	0	0	0	14	0	0	*
SuperContig_95000040	36	14	14	0	0	0	0	0	*
SuperContig_95000040	37	14	0	14	0	0	0	0	*
SuperContig_95000040	38	14	0	14	0	0	0	0	*
SuperContig_95000040	39	14	0	14	0	0	0	0	*
SuperContig_95000040	40	14	14	0	0	0	0	0	*
SuperContig_95000040	41	14	0	0	14	0	0	0	*
SuperContig_95000040	42	14	0	0	0	14	0	0	*
SuperContig_95000040	43	14	14	0	0	0	0	0	*
SuperContig_95000040	44	14	0	0	14	0	0	0	*
SuperContig_95000040	45	14	0	14	0	0	0	0	*
SuperContig_95000040	46	14	14	0	0	0	0	0	*
SuperContig_95000040	47	14	0	0	0	14	0	0	*
SuperContig_95000040	48	14	14	0	0	0	0	0	*
SuperContig_95000040	49	14	0	0	0	14	0	0	*
SuperContig_95000040	50	14	14	0	0	0	0	0	*
SuperContig_95000040	51	14	0	0	0	14	0	0	*
SuperContig_95000040	52	14	14	0	0	0	0	0	*
SuperContig_95000040	53	14	0	0	14	0	0	0	*
SuperContig_95000040	54	14	14	0	0	0	0	0	*
SuperContig_95000040	55	14	14	0	0	0	0	0	*
SuperContig_95000040	56	14	0	0	14	0	0	0	*
SuperContig_95000040	57	14	0	14	0	0	0	0	*
SuperContig_95000040	58	14	0	0	0	14	0	0	*
SuperContig_95000040	59	14	0	14	0	0	0	0	*
SuperContig_95000040	60	14	0	14	0	0	0	0	*
SuperContig_95000040	61	14	14	0	0	0	0	0	*
SuperContig_95000040	62	14	0	14	0	0	0	0	*
SuperContig_95000040	63	14	0	14	0	0	0	0	*
SuperContig_95000040	64	14	0	14	0	0	0	0	*
SuperContig_95000040	65	13	0	13	0	0	0	0	*
SuperContig_95000040	66	12	0	12	0	0	0	0	*
SuperContig_95000040	67	12	0	12	0	0	0	0	*
SuperContig_95000040	68	12	0	12	0	0	0	0	*
SuperContig_95000040	69	8	0	0	0	8	0	0	*
SuperContig_95000040	70	5	0	5	0	0	0	0	*
SuperContig_95000040	71	4	0	4	0	0	0	0	*
SuperContig_95000040	72	3	0	0	0	3	0	0	*
SuperContig_95000040	73	1	0	0	0	1	0	0	*
SuperContig_95000193	0	1	0	0	1	0	0	0	*
SuperContig_95000193	1	1	0	0	1	0	0	0	*
SuperContig_95000193	2	1	0	0	1	0	0	0	*
SuperContig_95000193	3	1	1	0	0	0	0	0	*
SuperContig_95000193	4	1	0	0	1	0	0	0	*
SuperContig_95000193	5	1	1	0	0	0	0	0	*
SuperContig_95000193	6	1	1	0	0	0	0	0	*
SuperContig_95000193	7	1	0	0	1	0	0	0	*
SuperContig_95000193	8	1	1	0	0	0	0	0	*
SuperContig_95000193	9	1	0	0	1	0	0	0	*
SuperContig_95000193	10	1	1	0	0	0	0	0	*
SuperContig_95000193	11	1	0	0	1	0	0	0	*
SuperContig_95000193	12	1	0	0	1	0	0	0	*
SuperContig_95000193	13	1	1	0	0	0	0	0	*
SuperContig_95000193	14	1	1	0	0	0	0	0	*
SuperContig_95000193	15	1	1	0	0	0	0	0	*
SuperContig_95000193	16	1	0	0	1	0	0	0	*
SuperContig_95000193	17	1	0	0	1	0	0	0	*
SuperContig_95000193	18	1	1	0	0	0	0	0	*
SuperContig_95000193	19	1	0	0	1	0	0	0	*
SuperContig_95000193	20	1	0	0	1	0	0	0	*
SuperContig_95000193	21	1	1	0	0	0	0	0	*
SuperContig_95000193	22	1	0	0	1	0	0	0	*
SuperContig_95000193	23	1	1	0	0	0	0	0	*
SuperContig_95000193	24	1	1	0	0	0	0	0	*
SuperContig_95000193	25	1	1	0	0	0	0	0	*
SuperContig_95000193	26	1	0	0	1	0	0	0	*
SuperContig_95000193	27	1	1	0	0	0	0	0	*
SuperContig_95000193	28	1	0	0	1	0	0	0	*
SuperContig_95000193	29	1	0	0	1	0	0	0	*
SuperContig_95000193	30	1	0	0	1	0	0	0	*
SuperContig_95000193	31	1	1	0	0	0	0	0	*
SuperContig_95000193	32	1	0	0	1	0	0	0	*
SuperContig_95000193	33	1	0	0	1	0	0	0	*
SuperContig_95000193	34	1	0	0	1	0	0	0	*
SuperContig_95000193	35	1	0	0	1	0	0	0	*
SuperContig_95000193	36	1	0	0	1	0	0	0	*
SuperContig_95000193	37	1	0	0	1	0	0	0	*
SuperContig_95000193	38	1	0	0	0	1	0	0	*
SuperContig_95000193	39	1	1	0	0	0	0	0	*
SuperContig_95000193	40	1	0	0	1	0	0	0	*
SuperContig_95000193	41	1	0	1	0	0	0	0	*
SuperContig_95000193	42	1	0	0	0	1	0	0	*
SuperContig_95000193	43	1	0	0	1	0	0	0	*
SuperContig_95000193	44	1	1	0	0	0	0	0	*
SuperContig_95000193	45	1	1	0	0	0	0	0	*
SuperContig_95000193	46	1	0	0	1	0	0	0	*
SuperContig_95000193	47	1	0	0	0	1	0	0	*
SuperContig_95000193	48	1	1	0	0	0	0	0	*
SuperContig_95000193	49	1	0	0	1	0	0	0	*
SuperContig_95000193	50	1	0	0	1	0	0	0	*
SuperContig_95000193	51	1	0	0	1	0	0	0	*
SuperContig_95000193	52	1	0	0	0	1	0	0	*
SuperContig_95000193	53	1	0	1	0	0	0	0	*
SuperContig_95000193	54	1	1	0	0	0	0	0	*
SuperContig_95000193	55	1	0	0	1	0	0	0	*
SuperContig_95000193	56	1	0	1	0	0	0	0	*
SuperContig_95000193	57	1	1	0	0	0	0	0	*
SuperContig_95000193	58	1	1	0	0	0	0	0	*
SuperContig_95000193	59	1	0	0	1	0	0	0	*
SuperContig_95000193	60	1	0	1	0	0	0	0	*
SuperContig_95000193	61	1	1	0	0	0	0	0	*
SuperContig_95000425	0	12	12	0	0	0	0	0	*
SuperContig_95000425	1	14	14	0	0	0	0	0	*
SuperContig_95000425	2	14	14	0	0	0	0	0	*
SuperContig_95000425	3	15	0	0	0	15	0	0	*
SuperContig_95000425	4	16	16	0	0	0	0	0	*
SuperContig_95000425	5	18	18	0	0	0	0	0	*
SuperContig_95000425	6	19	19	0	0	0	0	0	*
SuperContig_95000425	7	23	23	0	0	0	0	0	*
SuperContig_95000425	8	35	0	0	0	35	0	0	*
SuperContig_95000425	9	45	45	0	0	0	0	0	*
SuperContig_95000425	10	50	0	50	0	0	0	0	*
SuperContig_95000425	11	55	51	4	0	0	0	0	*
SuperContig_95000425	12	57	57	0	0	0	0	0	*
SuperContig_95000425	13	58	0	0	58	0	0	0	*
SuperContig_95000425	14	58	0	0	0	58	0	0	*
SuperContig_95000425	15	60	60	0	0	0	0	0	*
SuperContig_95000425	16	60	0	0	60	0	0	0	*
SuperContig_95000425	17	60	60	0	0	0	0	0	*
SuperContig_95000425	18	60	60	0	0	0	0	0	*
SuperContig_95000425	19	60	0	0	60	0	0	0	*
SuperContig_95000425	20	60	60	0	0	0	0	0	*
SuperContig_95000425	21	60	0	60	0	0	0	0	*
SuperContig_95000425	22	60	60	0	0	0	0	0	*
SuperContig_95000425	23	60	0	0	60	0	0	0	*
SuperContig_95000425	24	60	56	0	0	0	4	0	*
SuperContig_95000425	25	60	60	0	0	0	0	0	*
SuperContig_95000425	26	60	60	0	0	0	0	0	*
SuperContig_95000425	27	60	60	0	0	0	0	0	*
SuperContig_95000425	28	60	60	0	0	0	0	0	*
SuperContig_95000425	29	60	60	0	0	0	0	0	*
SuperContig_95000425	30	60	60	0	0	0	0	0	*
SuperContig_95000425	31	60	0	0	60	0	0	0	*
SuperContig_95000425	32	60	0	0	0	60	0	0	*
SuperContig_95000425	33	60	60	0	0	0	0	0	*
SuperContig_95000425	34	60	60	0	0	0	0	0	*
SuperContig_95000425	35	60	60	0	0	0	0	0	*
SuperContig_95000425	36	60	60	0	0	0	0	0	*
SuperContig_95000425	37	60	60	0	0	0	0	0	*
SuperContig_95000425	38	60	0	0	60	0	0	0	*
SuperContig_95000425	39	60	0	17	43	0	0	0	*
SuperContig_95000425	40	60	60	0	0	0	0	0	*
SuperContig_95000425	41	60	60	0	0	0	0	0	*
SuperContig_95000425	42	60	60	0	0	0	0	0	*
SuperContig_95000425	43	60	60	0	0	0	0	0	*
SuperContig_95000425	44	60	60	0	0	0	0	0	*
SuperContig_95000425	45	63	63	0	0	0	0	0	*
SuperContig_95000425	46	63	0	0	0	63	0	0	*
SuperContig_95000425	47	63	63	0	0	0	0	0	*
SuperContig_95000425	48	63	0	0	0	63	0	0	*
SuperContig_95000425	49	63	63	0	0	0	0	0	*
SuperContig_95000425	50	63	0	0	0	63	0	0	*
SuperContig_95000425	51	63	63	0	0	0	0	0	*
SuperContig_95000425	52	63	63	0	0	0	0	0	*
SuperContig_95000425	53	63	63	0	0	0	0	0	*
SuperContig_95000425	54	63	63	0	0	0	0	0	*
SuperContig_95000425	55	63	43	0	17	0	3	0	*
SuperContig_95000425	56	63	0	0	60	0	3	0	*
SuperContig_95000425	57	63	0	0	0	63	0	0	*
SuperContig_95000425	58	63	0	0	0	63	0	0	*
SuperContig_95000425	59	63	63	0	0	0	0	0	*
SuperContig_95000425	60	63	46	0	0	0	17	0	*
SuperContig_95000425	61	63	0	0	0	46	17	0	*
SuperContig_95000425	62	63	46	0	0	0	17	0	*
SuperContig_95000425	63	63	0	0	46	0	17	0	*
SuperContig_95000425	64	63	0	46	0	0	17	0	*
SuperContig_95000425	65	63	0	46	0	0	17	0	*
SuperContig_95000425	66	63	46	0	0	0	17	0	*
SuperContig_95000425	67	63	0	46	0	0	17	0	*
SuperContig_95000425	68	63	0	46	0	0	17	0	*
SuperContig_95000425	69	63	0	0	0	46	17	0	*
SuperContig_95000425	70	63	0	0	46	0	17	0	*
SuperContig_95000425	71	63	0	0	0	46	17	0	*
SuperContig_95000425	72	63	0	0	0	46	17	0	*
SuperContig_95000425	73	63	63	0	0	0	0	0	*
SuperContig_95000425	74	63	63	0	0	0	0	0	*
SuperContig_95000425	75	63	63	0	0	0	0	0	*
SuperContig_95000425	76	63	63	0	0	0	0	0	*
SuperContig_95000425	77	63	63	0	0	0	0	0	*
SuperContig_95000425	78	63	0	0	0	63	0	0	*
SuperContig_95000425	79	63	0	0	60	0	3	0	*
SuperContig_95000425	80	63	0	63	0	0	0	0	*
SuperContig_95000425	81	63	0	63	0	0	0	0	*
SuperContig_95000425	82	63	0	63	0	0	0	0	*
SuperContig_95000425	83	63	0	0	0	63	0	0	*
SuperContig_95000425	84	63	0	63	0	0	0	0	*
SuperContig_95000425	85	63	0	63	0	0	0	0	*
SuperContig_95000425	86	63	0	0	0	63	0	0	*
SuperContig_95000425	87	63	46	0	17	0	0	0	*
SuperContig_95000425	88	63	63	0	0	0	0	0	*
SuperContig_95000425	89	63	0	0	0	63	0	0	*
SuperContig_95000425	90	63	63	0	0	0	0	0	*
SuperContig_95000425	91	63	0	0	0	63	0	0	*
SuperContig_95000425	92	63	0	0	63	0	0	0	*
SuperContig_95000425	93	63	0	0	63	0	0	0	*
SuperContig_95000425	94	63	0	63	0	0	0	0	*
SuperContig_95000425	95	63	63	0	0	0	0	0	*
SuperContig_95000425	96	63	63	0	0	0	0	0	*
SuperContig_95000425	97	63	0	63	0	0	0	0	*
SuperContig_95000425	98	62	60	0	2	0	0	0	*
SuperContig_95000425	99	62	62	0	0	0	0	0	*
SuperContig_95000425	100	62	0	62	0	0	0	0	*
SuperContig_95000425	101	62	62	0	0	0	0	0	*
SuperContig_95000425	102	62	60	2	0	0	0	0	*
SuperContig_95000425	103	59	0	58	0	1	0	0	*
SuperContig_95000425	104	55	55	0	0	0	0	0	*
SuperContig_95000425	105	51	48	0	0	3	0	0	*
SuperContig_95000425	106	44	0	44	0	0	0	0	*
SuperContig_95000425	107	34	0	34	0	0	0	0	*
SuperContig_95000425	108	28	0	0	28	0	0	0	*
SuperContig_95000425	109	17	0	17	0	0	0	0	*
SuperContig_95000425	110	12	2	0	10	0	0	0	*
SuperContig_95000425	111	11	0	0	11	0	0	0	*
SuperContig_95000425	112	8	0	8	0	0	0	0	*
SuperContig_95000425	113	5	5	0	0	0	0	0	*
SuperContig_95000425	114	3	3	0	0	0	0	0	*
SuperContig_95000425	115	3	0	3	0	0	0	0	*
SuperContig_95000425	116	2	2	0	0	0	0	0	*
SuperContig_95000425	117	1	0	0	1	0	0	0	*