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set -e
pkg=samblaster
examplepkg=samtools
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${examplepkg}/examples/toy.sam "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
mv -f toy.sam read.sam
samblaster -i read.sam -o output --ignoreUnmated
if [ $(dpkg-architecture -qDEB_BUILD_ARCH) = "amd64" ]
then
echo "fa72ff571503186e9e6f73e92ddda07a output" > checksums
md5sum --check checksums
echo "Expected output and generated output are same: PASS Test"
else
[ -s "output" ] || exit 1
echo "PASS Test"
fi
|
