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#!/usr/bin/make -f
export DH_VERBOSE=1
export CURSES_LIB=-lcurses
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386))
export DEB_CFLAGS_MAINT_APPEND=-ffloat-store
endif
%:
dh $@
override_dh_auto_clean:
rm -f config.mk
touch config.mk
dh_auto_clean --
override_dh_auto_configure:
touch config.mk
aclocal --force -I debian/ -I /usr/share/aclocal
autoconf
dh_auto_configure -- --with-htslib=system
override_dh_auto_build:
dh_auto_build -- \
CFLAGS="$$(dpkg-buildflags --get CFLAGS)" \
CPPFLAGS="\$$(DFLAGS) \$$(INCLUDES) $$(dpkg-buildflags --get CPPFLAGS)" \
LDFLAGS="$$(dpkg-buildflags --get LDFLAGS)"
# Fix several issues in the manual pages.
execute_before_dh_installman:
# Fix whatis entries for subcommands; "samtools subcommand \- desc."
# will confuse the lexer, but "samtools-subcommand \- desc." will work.
sed -i '/^\.SH NAME/{n;s/^\([^ ]\+\) \([^ ]\+\) \\- /\1-\2 \\- /}' \
debian/*/usr/share/man/man*/*.*
# .EX expects a indentation width.
sed -i 's/^.EX$$/.EX 8/' debian/*/usr/share/man/man*/*.*
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
ifeq (,$(filter $(DEB_HOST_ARCH),mipsel))
dh_auto_test -- BGZIP=/usr/bin/bgzip
else
dh_auto_test -- BGZIP=/usr/bin/bgzip || true
endif
endif
override_dh_auto_install:
dh_auto_install -- \
prefix=/usr
make clean
override_dh_install:
dh_install
# Fix Perl interpreter PATH
for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \
sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' $${pscript} ; \
done
# Disable the executable bit on a dataset.
if [ -d debian/samtools-test ] \
; then chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed \
; fi
override_dh_installchangelogs:
dh_installchangelogs NEWS
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