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@HD VN:1.4 SO:coordinate
@RG ID:grp1 DS:Group 1 LB:Library 1 SM:Sample
@RG ID:grp2 DS:Group 2 LB:Library 2 SM:Sample
@RG ID:grp3 DS:Group 3 LB:Library 3 SM:Sample
@PG ID:prog1 PN:emacs CL:emacs VN:23.1.1
@CO
@CO Copyright (C) 2014 Genome Research Ltd.
@CO
@CO Permission is hereby granted, free of charge, to any person obtaining
@CO a copy of this software and associated documentation files (the
@CO "Software"), to deal in the Software without restriction, including
@CO without limitation the rights to use, copy, modify, merge, publish,
@CO distribute, sublicense, and/or sell copies of the Software, and to
@CO permit persons to whom the Software is furnished to do so, subject
@CO to the following conditions:
@CO
@CO The above copyright notice and this permission notice shall be
@CO included in all copies or substantial portions of the Software.
@CO
@CO THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
@CO EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
@CO MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
@CO IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
@CO CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
@CO TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
@CO SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
@CO
@SQ SN:ref1 LN:56 M5:08c04d512d4797d9ba2a156c1daba468
@SQ SN:ref2 LN:541556283 M5:7c35feac7036c1cdef3bee0cc4b21437
ref2_grp3_p001 83 ref2 1 99 15M = 31 45 ATTCTATAGTGTCAC ~~~~~~~~~~~~~~~ RG:Z:grp3 NM:i:0 MD:Z:15
ref12_grp1_p001 145 ref2 2 50 10M ref1 36 0 TTCTATAGTG BBBBBBBBBB RG:Z:grp1 NM:i:0 MD:Z:10
ref12_grp2_p001 145 ref2 12 50 10M ref1 46 0 TCACCTAAAT BBBBBBBBBB RG:Z:grp2 NM:i:0 MD:Z:10
ref2_grp3_p002 147 ref2 436870911 99 15M = 46 45 CTAAATAGCTTGGCG }}}}}}}}}}}}}}} RG:Z:grp3 NM:i:0 MD:Z:15
ref2_grp3_p002 99 ref2 541556280 99 15M = 16 -45 CTGTTTCCTGTGTGA {{{{{{{{{{{{{{{ RG:Z:grp3 NM:i:0 MD:Z:15
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