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@HD VN:1.4 SO:coordinate
@RG ID:grp1 DS:Group 1 LB:Library 1 SM:Sample
@RG ID:grp2 DS:Group 2 LB:Library 2 SM:Sample
@PG ID:prog1 PN:emacs CL:emacs VN:23.1.1
@CO The MIT License
@CO
@CO Copyright (c) 2014 Genome Research Ltd.
@CO
@CO Permission is hereby granted, free of charge, to any person obtaining a copy
@CO of this software and associated documentation files (the "Software"), to deal
@CO in the Software without restriction, including without limitation the rights
@CO to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
@CO copies of the Software, and to permit persons to whom the Software is
@CO furnished to do so, subject to the following conditions:
@CO
@CO The above copyright notice and this permission notice shall be included in
@CO all copies or substantial portions of the Software.
@CO
@CO THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
@CO IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
@CO FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@CO AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
@CO LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
@CO OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
@CO THE SOFTWARE.
@SQ SN:ref1 LN:56 M5:08c04d512d4797d9ba2a156c1daba468
@SQ SN:ref2 LN:60 M5:7c35feac7036c1cdef3bee0cc4b21437
@SQ SN:ref3_unused LN:70 M5:5fdd18c2c6ecac4838996d029bf395b5
ref2_grp3_p001 83 ref2 1 99 15M = 31 45 ATTCTATAGTGTCAC ~~~~~~~~~~~~~~~ NM:i:0 MD:Z:15 an:Z:cat
ref2_grp3_p002 147 ref2 16 99 15M = 46 45 CTAAATAGCTTGGCG }}}}}}}}}}}}}}} NM:i:0 MD:Z:15 RG:Z:grp3 an:Z:dog
ref2_grp3_p001 163 ref2 31 99 15M = 1 -45 CTGTTTCCTGTGTGA ||||||||||||||| NM:i:13 MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0 an:Z:cat
ref2_grp3_p002 99 ref2 46 99 15M = 16 -45 CTGTTTCCTGTGTGA {{{{{{{{{{{{{{{ NM:i:0 MD:Z:15 RG:Z:grp3 an:Z:dog
unaligned_grp3_p001 77 * 0 0 * * 0 0 CACTCGTTCATGACG 0123456789abcde an:Z:dog
unaligned_grp3_p001 141 * 0 0 * * 0 0 GAAAGTGAGGAGGTG edcba9876543210 an:Z:dog
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