1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
@HD VN:1.4 SO:coordinate
@RG ID:grp1 DS:Group 1 LB:Library 1 SM:Sample
@RG ID:grp2 DS:Group 2 LB:Library 2 SM:Sample
@PG ID:prog1 PN:emacs CL:emacs VN:23.1.1
@CO The MIT License
@CO
@CO Copyright (c) 2024 Genome Research Ltd.
@CO
@CO Permission is hereby granted, free of charge, to any person obtaining a copy
@CO of this software and associated documentation files (the "Software"), to deal
@CO in the Software without restriction, including without limitation the rights
@CO to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
@CO copies of the Software, and to permit persons to whom the Software is
@CO furnished to do so, subject to the following conditions:
@CO
@CO The above copyright notice and this permission notice shall be included in
@CO all copies or substantial portions of the Software.
@CO
@CO THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
@CO IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
@CO FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@CO AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
@CO LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
@CO OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
@CO THE SOFTWARE.
@SQ SN:ref1 LN:56 M5:08c04d512d4797d9ba2a156c1daba468
@SQ SN:ref2 LN:60 M5:7c35feac7036c1cdef3bee0cc4b21437
@SQ SN:ref3_unused LN:70 M5:5fdd18c2c6ecac4838996d029bf395b5
ref1_grp1_p001 99 ref1 1 0 10M = 25 34 CGAGCTCGGT !!!!!!!!!! RG:Z:grp1 BC:Z:ACGT H0:i:1 aa:A:! ab:A:~ fa:f:3.14159 za:Z:Hello world! ha:H:DEADBEEF ba:B:c,-128,0,127 bb:B:C,0,127,255 bc:B:s,-32768,0,32767 bd:B:S,0,32768,65535 be:B:i,-2147483648,0,2147483647 bf:B:I,0,2147483648,4294967295 bg:B:f,2.71828,6.626e-34,2.9979e+09 NM:i:0 MD:Z:10 an:Z:badger nn:i:2
ref1_grp1_p002 99 ref1 5 2 10M = 29 34 CTCGGTACCC ########## RG:Z:grp1 BC:Z:AATTCCGG H0:i:1 aa:A:a ab:A:z fa:f:4.3597e-18 za:Z:Another string ha:H:2000AD NM:i:0 MD:Z:10 an:Z:cat nn:i:2
ref1_grp2_p002 99 ref1 7 3 10M = 31 34 CGGTACCCGG $$$$$$$$$$ fa:f:6.022e+23 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:badger nn:i:2
ref1_grp1_p004 99 ref1 13 6 10M = 37 34 CCGGGGATCC '''''''''' fa:f:1.38e-23 za:Z:xRG:Z:grp2 RG:Z:grp1 NM:i:0 MD:Z:10 an:Z:badger nn:i:2
ref1_grp2_p006 99 ref1 23 11 10M = 47 34 TCTAGAGTCG ,,,,,,,,,, RG:Z:grp2 ia:i:-1 NM:i:0 MD:Z:10 nn:i:2
ref1_grp1_p003 147 ref1 33 16 10M = 9 -34 ACCTGCAGGC 1111111111 RG:Z:grp1 NM:i:0 MD:Z:10 an:Z:cat nn:i:2
ref1_grp1_p004 147 ref1 37 18 10M = 13 -34 GCAGGCATGC 3333333333 RG:Z:grp1 NM:i:0 MD:Z:10 an:Z:badger nn:i:2
ref1_grp2_p004 147 ref1 39 19 10M = 15 -34 AGGCATGCAA 4444444444 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:aardvark nn:i:2
ref2_grp3_p001 83 ref2 1 99 15M = 31 45 ATTCTATAGTGTCAC ~~~~~~~~~~~~~~~ NM:i:0 MD:Z:15 an:Z:cat nn:i:2
ref2_grp3_p002 147 ref2 16 99 15M = 46 45 CTAAATAGCTTGGCG }}}}}}}}}}}}}}} NM:i:0 MD:Z:15 RG:Z:grp3 an:Z:dog nn:i:2
ref2_grp3_p001 163 ref2 31 99 15M = 1 -45 CTGTTTCCTGTGTGA ||||||||||||||| NM:i:13 MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0 an:Z:cat nn:i:2
unaligned_grp3_p001 77 * 0 0 * * 0 0 CACTCGTTCATGACG 0123456789abcde an:Z:dog nn:i:2
|
