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@HD VN:1.4 SO:coordinate
@RG ID:grp1 DS:Group 1 LB:Library 1 SM:Sample
@PG ID:prog1 PN:emacs CL:emacs VN:23.1.1
@CO The MIT License
@CO
@CO Copyright (c) 2014 Genome Research Ltd.
@CO
@CO Permission is hereby granted, free of charge, to any person obtaining a copy
@CO of this software and associated documentation files (the "Software"), to deal
@CO in the Software without restriction, including without limitation the rights
@CO to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
@CO copies of the Software, and to permit persons to whom the Software is
@CO furnished to do so, subject to the following conditions:
@CO
@CO The above copyright notice and this permission notice shall be included in
@CO all copies or substantial portions of the Software.
@CO
@CO THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
@CO IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
@CO FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@CO AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
@CO LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
@CO OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
@CO THE SOFTWARE.
@CO
@CO Test file for the -B option. Only very basic tests here. The full
@CO B operator semantics are currently not well defined so it's not
@CO possible to say what should happen in certain cases.
@CO For a long discussion of B operators, see
@CO https://sourceforge.net/p/samtools/mailman/message/28463294/
@CO
@SQ SN:ref1 LN:56 M5:08c04d512d4797d9ba2a156c1daba468
ref1_grp1_p001 0 ref1 1 0 15M = 25 34 CGAGCACGGTACCCG AAAAA"BBBBBBBBB RG:Z:grp1
ref1_grp1_p002 0 ref1 1 0 15M = 25 34 CGAGCTCGGTACCCG BBBBB"BBBBAAAAA RG:Z:grp1
ref1_grp1_p003 0 ref1 1 0 15M = 25 34 CGAGCACGGTACCCG 000002AAAAAAAAA RG:Z:grp1
ref1_grp1_p004 0 ref1 1 0 15M = 25 34 CGAGCTCGGTACCCG AAAAA2AAAA00000 RG:Z:grp1
ref1_grp1_p005 4 ref1 2 0 1M2B1M = 25 34 GC AA RG:Z:grp1
ref1_grp1_p006 0 ref1 2 0 1M1I1M = 25 34 GTA 0AA RG:Z:grp1
ref1_grp1_p007 0 ref1 3 0 1M1D1M = 25 34 AG 00 RG:Z:grp1
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