File: 6_ct_replace.sam.expected

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@HD	VN:1.4	SO:queryname
@SQ	SN:1	LN:4569345
@RG	ID:1#6	LB:1	SM:a
MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M	ct:Z:1F75M-75T2R75M
MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M