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@HD VN:1.6 SO:unsorted GO:query
@CO Reverse with: samtools fastq -1 R1.fastq -2 R2.fastq
@RG ID:rgid
ref1_grp1_p001 77 * 0 0 * * 0 0 CGAGCTCGGT !!!!!!!!!! RG:Z:rgid
ref1_grp1_p001 141 * 0 0 * * 0 0 GTCGACTCTA ---------- RG:Z:rgid
ref1_grp1_p002 77 * 0 0 * * 0 0 CTCGGTACCC ########## RG:Z:rgid
ref1_grp1_p002 141 * 0 0 * * 0 0 GCAGGTCGAC ////////// RG:Z:rgid
ref1_grp1_p003 77 * 0 0 * * 0 0 GTACCCGGGG %%%%%%%%%% RG:Z:rgid
ref1_grp1_p003 141 * 0 0 * * 0 0 GCCTGCAGGT 1111111111 RG:Z:rgid
ref1_grp1_p004 77 * 0 0 * * 0 0 CCGGGGATCC '''''''''' RG:Z:rgid
ref1_grp1_p004 141 * 0 0 * * 0 0 GCATGCCTGC 3333333333 RG:Z:rgid
ref1_grp1_p005 77 * 0 0 * * 0 0 GGATCCTCTA )))))))))) RG:Z:rgid
ref1_grp1_p005 141 * 0 0 * * 0 0 GCTTGCATGC 5555555555 RG:Z:rgid
ref1_grp1_p006 77 * 0 0 * * 0 0 CCTCTAGAGT ++++++++++ RG:Z:rgid
ref1_grp1_p006 141 * 0 0 * * 0 0 TCAAGCTTGC 7777777777 RG:Z:rgid
ref1_grp2_p001 77 * 0 0 * * 0 0 AGCTCGGTAC """""""""" RG:Z:rgid
ref1_grp2_p001 141 * 0 0 * * 0 0 AGGTCGACTC .......... RG:Z:rgid
ref1_grp2_p002 77 * 0 0 * * 0 0 CGGTACCCGG $$$$$$$$$$ RG:Z:rgid
ref1_grp2_p002 141 * 0 0 * * 0 0 CTGCAGGTCG 0000000000 RG:Z:rgid
ref1_grp2_p003 77 * 0 0 * * 0 0 ACCCGGGGAT &&&&&&&&&& RG:Z:rgid
ref1_grp2_p003 141 * 0 0 * * 0 0 ATGCCTGCAG 2222222222 RG:Z:rgid
ref1_grp2_p004 77 * 0 0 * * 0 0 GGGGATCCTC (((((((((( RG:Z:rgid
ref1_grp2_p004 141 * 0 0 * * 0 0 TTGCATGCCT 4444444444 RG:Z:rgid
ref1_grp2_p005 77 * 0 0 * * 0 0 ATCCTCTAGA ********** RG:Z:rgid
ref1_grp2_p005 141 * 0 0 * * 0 0 AAGCTTGCAT 6666666666 RG:Z:rgid
ref1_grp2_p006 77 * 0 0 * * 0 0 TCTAGAGTCG ,,,,,,,,,, RG:Z:rgid
ref1_grp2_p006 141 * 0 0 * * 0 0 ACTCAAGCTT 8888888888 RG:Z:rgid
ref2_grp3_p001 77 * 0 0 * * 0 0 GTGACACTATAGAAT ~~~~~~~~~~~~~~~ RG:Z:rgid
ref2_grp3_p001 141 * 0 0 * * 0 0 CTGTTTCCTGTGTGA ||||||||||||||| RG:Z:rgid
ref2_grp3_p002 77 * 0 0 * * 0 0 CTGTTTCCTGTGTGA {{{{{{{{{{{{{{{ RG:Z:rgid
ref2_grp3_p002 141 * 0 0 * * 0 0 CGCCAAGCTATTTAG }}}}}}}}}}}}}}} RG:Z:rgid
ref2_grp3_p003 77 * 0 0 * * 0 0 ACGTMRWSYKVHDBN 0123456789abcd! RG:Z:rgid
ref2_grp3_p003 141 * 0 0 * * 0 0 ACGTMRWSYKVHDBN 0123456789abcd! RG:Z:rgid
ref12_grp1_p001 77 * 0 0 * * 0 0 TGCAGGCATG AAAAAAAAAA RG:Z:rgid
ref12_grp1_p001 141 * 0 0 * * 0 0 CACTATAGAA BBBBBBBBBB RG:Z:rgid
ref12_grp2_p001 77 * 0 0 * * 0 0 CAAGCTTGAG AAAAAAAAAA RG:Z:rgid
ref12_grp2_p001 141 * 0 0 * * 0 0 ATTTAGGTGA BBBBBBBBBB RG:Z:rgid
unaligned_grp3_p001 77 * 0 0 * * 0 0 CACTCGTTCATGACG 0123456789abcde RG:Z:rgid
unaligned_grp3_p001 141 * 0 0 * * 0 0 GAAAGTGAGGAGGTG edcba9876543210 RG:Z:rgid
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