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@HD VN:1.4 SO:coordinate
@CO The MIT License
@CO
@CO Copyright (c) 2014 Genome Research Ltd.
@CO
@CO Permission is hereby granted, free of charge, to any person obtaining a copy
@CO of this software and associated documentation files (the "Software"), to deal
@CO in the Software without restriction, including without limitation the rights
@CO to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
@CO copies of the Software, and to permit persons to whom the Software is
@CO furnished to do so, subject to the following conditions:
@CO
@CO The above copyright notice and this permission notice shall be included in
@CO all copies or substantial portions of the Software.
@CO
@CO THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
@CO IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
@CO FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@CO AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
@CO LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
@CO OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
@CO THE SOFTWARE.
@SQ SN:ref1 LN:56 M5:08c04d512d4797d9ba2a156c1daba468
@SQ SN:ref2 LN:60 M5:7c35feac7036c1cdef3bee0cc4b21437
@SQ SN:ref3_unused LN:70 M5:5fdd18c2c6ecac4838996d029bf395b5
@RG ID:grp2 DS:Group 2 LB:Library 2 SM:Sample
ref1_grp2_p001 99 ref1 3 1 10M = 27 34 AGCTCGGTAC """""""""" RG:Z:grp2 BC:Z:TGCA H0:i:1 aa:A:A ab:A:Z fa:f:6.67e-11 za:Z:!"$%^&*() ha:H:CAFE NM:i:0 MD:Z:10 an:Z:badger
ref1_grp2_p002 99 ref1 7 3 10M = 31 34 CGGTACCCGG $$$$$$$$$$ fa:f:6.022e+23 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:badger
ref1_grp2_p003 99 ref1 11 5 10M = 35 34 ACCCGGGGAT &&&&&&&&&& RG:Z:grp2 ia:i:4294967295 NM:i:0 MD:Z:10 an:Z:dog
ref1_grp2_p004 99 ref1 15 7 10M = 39 34 GGGGATCCTC (((((((((( RG:Z:grp2 ia:i:-2147483648 NM:i:0 MD:Z:10 an:Z:aardvark
ref1_grp2_p005 99 ref1 19 9 10M = 43 34 ATCCTCTAGA ********** RG:Z:grp2 ia:i:-1000 NM:i:0 MD:Z:10 an:Z:aardvark
ref1_grp2_p006 99 ref1 23 11 10M = 47 34 TCTAGAGTCG ,,,,,,,,,, RG:Z:grp2 ia:i:-1 NM:i:0 MD:Z:10
ref1_grp2_p001 147 ref1 27 13 10M = 3 -34 GAGTCGACCT .......... RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:badger
ref1_grp2_p002 147 ref1 31 15 10M = 7 -34 CGACCTGCAG 0000000000 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:badger
ref1_grp2_p003 147 ref1 35 17 10M = 11 -34 CTGCAGGCAT 2222222222 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:dog
ref1_grp2_p004 147 ref1 39 19 10M = 15 -34 AGGCATGCAA 4444444444 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:aardvark
ref1_grp2_p005 147 ref1 43 21 10M = 19 -34 ATGCAAGCTT 6666666666 RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:aardvark
ref12_grp2_p001 97 ref1 46 50 10M ref2 12 0 CAAGCTTGAG AAAAAAAAAA RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:cat
ref1_grp2_p006 147 ref1 47 23 10M = 23 -34 AAGCTTGAGT 8888888888 RG:Z:grp2 NM:i:0 MD:Z:10
ref12_grp2_p001 145 ref2 12 50 10M ref1 46 0 TCACCTAAAT BBBBBBBBBB RG:Z:grp2 NM:i:0 MD:Z:10 an:Z:cat
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