1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
|
# CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK 0d0e09b1 c6b1072c 6e349efa
# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN raw total sequences: 1 # excluding supplementary and secondary reads
SN filtered sequences: 0
SN sequences: 1
SN is sorted: 1 # sorted by coordinate
SN 1st fragments: 1
SN last fragments: 0
SN reads mapped: 1
SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped
SN reads unmapped: 0
SN reads properly paired: 0 # proper-pair bit set
SN reads paired: 0 # paired-end technology bit set
SN reads duplicated: 0 # PCR or optical duplicate bit set
SN reads MQ0: 0 # mapped and MQ=0
SN reads QC failed: 0
SN non-primary alignments: 0
SN supplementary alignments: 0
SN total length: 40 # ignores clipping
SN total first fragment length: 40 # ignores clipping
SN total last fragment length: 0 # ignores clipping
SN bases mapped: 40 # ignores clipping
SN bases mapped (cigar): 40 # more accurate
SN bases trimmed: 0
SN bases duplicated: 0
SN mismatches: 0 # from NM fields
SN error rate: 0.000000e+00 # mismatches / bases mapped (cigar)
SN average length: 40
SN average first fragment length: 40
SN average last fragment length: 0
SN maximum length: 40
SN maximum first fragment length: 40
SN maximum last fragment length: 0
SN average quality: 32.5
SN insert size average: 0.0
SN insert size standard deviation: 0.0
SN inward oriented pairs: 0
SN outward oriented pairs: 0
SN pairs with other orientation: 0
SN pairs on different chromosomes: 0
SN percentage of properly paired reads (%): 0.0
# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
# Columns correspond to qualities and rows to cycles. First column is the cycle number.
FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
FFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
FFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
# Columns correspond to qualities and rows to cycles. First column is the cycle number.
# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
# is the number of N's and the rest is the number of mismatches
MPC 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
MPC 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
GCF 12.31 0
GCF 25.88 1
# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
GCC 1 100.00 0.00 0.00 0.00 0.00 0.00
GCC 2 100.00 0.00 0.00 0.00 0.00 0.00
GCC 3 0.00 100.00 0.00 0.00 0.00 0.00
GCC 4 100.00 0.00 0.00 0.00 0.00 0.00
GCC 5 0.00 0.00 0.00 100.00 0.00 0.00
GCC 6 100.00 0.00 0.00 0.00 0.00 0.00
GCC 7 0.00 0.00 0.00 100.00 0.00 0.00
GCC 8 0.00 0.00 0.00 100.00 0.00 0.00
GCC 9 0.00 0.00 0.00 100.00 0.00 0.00
GCC 10 0.00 0.00 0.00 100.00 0.00 0.00
GCC 11 0.00 100.00 0.00 0.00 0.00 0.00
GCC 12 100.00 0.00 0.00 0.00 0.00 0.00
GCC 13 0.00 0.00 100.00 0.00 0.00 0.00
GCC 14 0.00 0.00 0.00 100.00 0.00 0.00
GCC 15 0.00 0.00 0.00 100.00 0.00 0.00
GCC 16 0.00 0.00 0.00 100.00 0.00 0.00
GCC 17 0.00 0.00 0.00 100.00 0.00 0.00
GCC 18 0.00 100.00 0.00 0.00 0.00 0.00
GCC 19 100.00 0.00 0.00 0.00 0.00 0.00
GCC 20 0.00 0.00 100.00 0.00 0.00 0.00
GCC 21 0.00 100.00 0.00 0.00 0.00 0.00
GCC 22 0.00 100.00 0.00 0.00 0.00 0.00
GCC 23 0.00 0.00 100.00 0.00 0.00 0.00
GCC 24 100.00 0.00 0.00 0.00 0.00 0.00
GCC 25 100.00 0.00 0.00 0.00 0.00 0.00
GCC 26 0.00 0.00 0.00 100.00 0.00 0.00
GCC 27 0.00 0.00 0.00 100.00 0.00 0.00
GCC 28 0.00 0.00 0.00 100.00 0.00 0.00
GCC 29 0.00 0.00 0.00 100.00 0.00 0.00
GCC 30 100.00 0.00 0.00 0.00 0.00 0.00
GCC 31 0.00 0.00 0.00 100.00 0.00 0.00
GCC 32 0.00 0.00 100.00 0.00 0.00 0.00
GCC 33 0.00 0.00 0.00 100.00 0.00 0.00
GCC 34 100.00 0.00 0.00 0.00 0.00 0.00
GCC 35 0.00 0.00 0.00 100.00 0.00 0.00
GCC 36 0.00 0.00 100.00 0.00 0.00 0.00
GCC 37 0.00 0.00 0.00 100.00 0.00 0.00
GCC 38 0.00 0.00 0.00 100.00 0.00 0.00
GCC 39 0.00 0.00 0.00 100.00 0.00 0.00
GCC 40 0.00 0.00 0.00 100.00 0.00 0.00
# ACGT content per cycle, read oriented. Use `grep ^GCT | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]
GCT 1 100.00 0.00 0.00 0.00
GCT 2 100.00 0.00 0.00 0.00
GCT 3 0.00 100.00 0.00 0.00
GCT 4 100.00 0.00 0.00 0.00
GCT 5 0.00 0.00 0.00 100.00
GCT 6 100.00 0.00 0.00 0.00
GCT 7 0.00 0.00 0.00 100.00
GCT 8 0.00 0.00 0.00 100.00
GCT 9 0.00 0.00 0.00 100.00
GCT 10 0.00 0.00 0.00 100.00
GCT 11 0.00 100.00 0.00 0.00
GCT 12 100.00 0.00 0.00 0.00
GCT 13 0.00 0.00 100.00 0.00
GCT 14 0.00 0.00 0.00 100.00
GCT 15 0.00 0.00 0.00 100.00
GCT 16 0.00 0.00 0.00 100.00
GCT 17 0.00 0.00 0.00 100.00
GCT 18 0.00 100.00 0.00 0.00
GCT 19 100.00 0.00 0.00 0.00
GCT 20 0.00 0.00 100.00 0.00
GCT 21 0.00 100.00 0.00 0.00
GCT 22 0.00 100.00 0.00 0.00
GCT 23 0.00 0.00 100.00 0.00
GCT 24 100.00 0.00 0.00 0.00
GCT 25 100.00 0.00 0.00 0.00
GCT 26 0.00 0.00 0.00 100.00
GCT 27 0.00 0.00 0.00 100.00
GCT 28 0.00 0.00 0.00 100.00
GCT 29 0.00 0.00 0.00 100.00
GCT 30 100.00 0.00 0.00 0.00
GCT 31 0.00 0.00 0.00 100.00
GCT 32 0.00 0.00 100.00 0.00
GCT 33 0.00 0.00 0.00 100.00
GCT 34 100.00 0.00 0.00 0.00
GCT 35 0.00 0.00 0.00 100.00
GCT 36 0.00 0.00 100.00 0.00
GCT 37 0.00 0.00 0.00 100.00
GCT 38 0.00 0.00 0.00 100.00
GCT 39 0.00 0.00 0.00 100.00
GCT 40 0.00 0.00 0.00 100.00
# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
FBC 1 100.00 0.00 0.00 0.00 0.00 0.00
FBC 2 100.00 0.00 0.00 0.00 0.00 0.00
FBC 3 0.00 100.00 0.00 0.00 0.00 0.00
FBC 4 100.00 0.00 0.00 0.00 0.00 0.00
FBC 5 0.00 0.00 0.00 100.00 0.00 0.00
FBC 6 100.00 0.00 0.00 0.00 0.00 0.00
FBC 7 0.00 0.00 0.00 100.00 0.00 0.00
FBC 8 0.00 0.00 0.00 100.00 0.00 0.00
FBC 9 0.00 0.00 0.00 100.00 0.00 0.00
FBC 10 0.00 0.00 0.00 100.00 0.00 0.00
FBC 11 0.00 100.00 0.00 0.00 0.00 0.00
FBC 12 100.00 0.00 0.00 0.00 0.00 0.00
FBC 13 0.00 0.00 100.00 0.00 0.00 0.00
FBC 14 0.00 0.00 0.00 100.00 0.00 0.00
FBC 15 0.00 0.00 0.00 100.00 0.00 0.00
FBC 16 0.00 0.00 0.00 100.00 0.00 0.00
FBC 17 0.00 0.00 0.00 100.00 0.00 0.00
FBC 18 0.00 100.00 0.00 0.00 0.00 0.00
FBC 19 100.00 0.00 0.00 0.00 0.00 0.00
FBC 20 0.00 0.00 100.00 0.00 0.00 0.00
FBC 21 0.00 100.00 0.00 0.00 0.00 0.00
FBC 22 0.00 100.00 0.00 0.00 0.00 0.00
FBC 23 0.00 0.00 100.00 0.00 0.00 0.00
FBC 24 100.00 0.00 0.00 0.00 0.00 0.00
FBC 25 100.00 0.00 0.00 0.00 0.00 0.00
FBC 26 0.00 0.00 0.00 100.00 0.00 0.00
FBC 27 0.00 0.00 0.00 100.00 0.00 0.00
FBC 28 0.00 0.00 0.00 100.00 0.00 0.00
FBC 29 0.00 0.00 0.00 100.00 0.00 0.00
FBC 30 100.00 0.00 0.00 0.00 0.00 0.00
FBC 31 0.00 0.00 0.00 100.00 0.00 0.00
FBC 32 0.00 0.00 100.00 0.00 0.00 0.00
FBC 33 0.00 0.00 0.00 100.00 0.00 0.00
FBC 34 100.00 0.00 0.00 0.00 0.00 0.00
FBC 35 0.00 0.00 0.00 100.00 0.00 0.00
FBC 36 0.00 0.00 100.00 0.00 0.00 0.00
FBC 37 0.00 0.00 0.00 100.00 0.00 0.00
FBC 38 0.00 0.00 0.00 100.00 0.00 0.00
FBC 39 0.00 0.00 0.00 100.00 0.00 0.00
FBC 40 0.00 0.00 0.00 100.00 0.00 0.00
# ACGT raw counters for first fragments. Use `grep ^FTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters
FTC 10 5 5 20 0
# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
# ACGT raw counters for last fragments. Use `grep ^LTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters
LTC 0 0 0 0 0
# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
RL 40 1
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL 40 1
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
MAPQ 40 1
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
IC 20 0 0 1 0
# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
COV [1-1] 1 40
# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000
|
