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Folder: 1.22.1-1
| .. (parent) | ||||
| d | rwxr-xr-x | 133 | .pc | |
| d | rwxr-xr-x | 4,096 | debian | |
| d | rwxr-xr-x | 4,096 | doc | |
| d | rwxr-xr-x | 106 | examples | |
| d | rwxr-xr-x | 60 | lz4 | |
| d | rwxr-xr-x | 101 | m4 | |
| d | rwxr-xr-x | 4,096 | misc | |
| d | rwxr-xr-x | 4,096 | test | |
| - | rw-r--r-- | 828 | AUTHORS | |
| - | rw-r--r-- | 116,368 | ChangeLog.old | |
| - | rw-r--r-- | 10,572 | INSTALL | |
| - | rw-r--r-- | 1,706 | LICENSE | |
| - | rw-r--r-- | 19,169 | Makefile | |
| - | rw-r--r-- | 115,631 | NEWS.md | |
| - | rw-r--r-- | 6,001 | README | |
| - | rw-r--r-- | 64,492 | amplicon_stats.c | |
| - | rw-r--r-- | 8,994 | bam.c | |
| - | rw-r--r-- | 1,523 | bam.h | |
| - | rw-r--r-- | 4,364 | bam2bcf.c | |
| - | rw-r--r-- | 2,051 | bam2bcf.h | |
| - | rw-r--r-- | 33,388 | bam2depth.c | |
| - | rw-r--r-- | 15,919 | bam_addrprg.c | |
| - | rw-r--r-- | 40,070 | bam_ampliconclip.c | |
| - | rw-r--r-- | 1,917 | bam_ampliconclip.h | |
| - | rw-r--r-- | 2,155 | bam_aux.c | |
| - | rw-r--r-- | 34,092 | bam_cat.c | |
| - | rw-r--r-- | 43,221 | bam_checksum.c | |
| - | rw-r--r-- | 4,969 | bam_color.c | |
| - | rw-r--r-- | 118,840 | bam_consensus.c | |
| - | rw-r--r-- | 13,301 | bam_consensus_tab.h | |
| - | rw-r--r-- | 36,887 | bam_fastq.c | |
| - | rw-r--r-- | 3,257 | bam_flags.c | |
| - | rw-r--r-- | 17,443 | bam_import.c | |
| - | rw-r--r-- | 9,716 | bam_index.c | |
| - | rw-r--r-- | 6,949 | bam_lpileup.c | |
| - | rw-r--r-- | 2,059 | bam_lpileup.h | |
| - | rw-r--r-- | 84,991 | bam_markdup.c | |
| - | rw-r--r-- | 43,201 | bam_mate.c | |
| - | rw-r--r-- | 18,673 | bam_md.c | |
| - | rw-r--r-- | 2,126 | bam_plbuf.c | |
| - | rw-r--r-- | 1,866 | bam_plbuf.h | |
| - | rw-r--r-- | 47,280 | bam_plcmd.c | |
| - | rw-r--r-- | 6,742 | bam_quickcheck.c | |
| - | rw-r--r-- | 20,517 | bam_reheader.c | |
| - | rw-r--r-- | 10,668 | bam_rmdup.c | |
| - | rw-r--r-- | 7,510 | bam_rmdupse.c | |
| - | rw-r--r-- | 14,613 | bam_samples.c | |
| - | rw-r--r-- | 136,493 | bam_sort.c | |
| - | rw-r--r-- | 32,176 | bam_split.c | |
| - | rw-r--r-- | 13,640 | bam_stat.c | |
| - | rw-r--r-- | 20,011 | bam_tview.c | |
| - | rw-r--r-- | 3,534 | bam_tview.h | |
| - | rw-r--r-- | 16,504 | bam_tview_curses.c | |
| - | rw-r--r-- | 11,074 | bam_tview_html.c | |
| - | rw-r--r-- | 20,628 | bamshuf.c | |
| - | rw-r--r-- | 13,745 | bamtk.c | |
| - | rw-r--r-- | 13,951 | bedcov.c | |
| - | rw-r--r-- | 20,042 | bedidx.c | |
| - | rw-r--r-- | 1,767 | bedidx.h | |
| - | rw-r--r-- | 2,130 | config.mk.in | |
| - | rw-r--r-- | 5,771 | configure.ac | |
| - | rw-r--r-- | 19,099 | consensus_pileup.c | |
| - | rw-r--r-- | 6,409 | consensus_pileup.h | |
| - | rw-r--r-- | 29,093 | coverage.c | |
| - | rw-r--r-- | 20,627 | cram_size.c | |
| - | rw-r--r-- | 8,899 | cut_target.c | |
| - | rw-r--r-- | 7,526 | dict.c | |
| - | rw-r--r-- | 24,853 | faidx.c | |
| - | rwxr-xr-x | 14,675 | install-sh | |
| - | rw-r--r-- | 25,362 | padding.c | |
| - | rw-r--r-- | 30,065 | phase.c | |
| - | rw-r--r-- | 18,646 | reference.c | |
| - | rw-r--r-- | 22,244 | reset.c | |
| - | rw-r--r-- | 7,009 | sam_opts.c | |
| - | rw-r--r-- | 4,122 | sam_opts.h | |
| - | rw-r--r-- | 5,854 | sam_utils.c | |
| - | rw-r--r-- | 3,350 | sam_utils.h | |
| - | rw-r--r-- | 64,947 | sam_view.c | |
| - | rw-r--r-- | 4,540 | sample.c | |
| - | rw-r--r-- | 1,560 | sample.h | |
| - | rw-r--r-- | 1,992 | samtools.h | |
| - | rw-r--r-- | 14,621 | splaysort.h | |
| - | rw-r--r-- | 109,876 | stats.c | |
| - | rw-r--r-- | 8,075 | stats_isize.c | |
| - | rw-r--r-- | 2,484 | stats_isize.h | |
| - | rw-r--r-- | 13,783 | tmp_file.c | |
| - | rw-r--r-- | 3,643 | tmp_file.h | |
| - | rwxr-xr-x | 1,539 | version.sh |
