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#!/bin/bash
set -euo pipefail
src_dir=$1
out_dir=$2
#linux_version=$(lsb_release -si | tr '[:upper:]' '[:lower:]')-$(lsb_release -sr)
#cget install -DCMAKE_C_FLAGS=-fPIC -DCMAKE_CXX_FLAGS=-fPIC jonathonl/shrinkwrap@v1.0.0-beta --prefix /cget
#cget install -DCMAKE_C_FLAGS=-fPIC -DCMAKE_CXX_FLAGS=-fPIC htslib,https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2 -DCMAKE_VERBOSE_MAKEFILE=1 --cmake /savvy-src/dep/htslib.cmake --prefix /cget
export CFLAGS="-fPIC"
export CXXFLAGS="-fPIC"
cget --version
cget ignore xz
cget install -f ${src_dir}/requirements.txt --prefix /cget
rm /cget/lib/libz.so*
ls -ahl /cget/lib/
cget remove --yes jonathonl/shrinkwrap --prefix /cget
cget install -f ${src_dir}/requirements.txt --prefix /cget
unset CFLAGS
unset CXXFLAGS
## libsavvy.so old abi
#mkdir build-api-cxx3-abi
#cd build-api-cxx3-abi
#cmake \
# -DCMAKE_BUILD_TYPE=Release \
# -DCMAKE_TOOLCHAIN_FILE=/cget/cget/cget.cmake \
# -DBUILD_SHARED_LIBS=ON \
# -DCMAKE_CXX_FLAGS="-static-libstdc++" \
# -DUSE_CXX3_ABI=ON \
# -DCPACK_SYSTEM_NAME=Linux-CXX3-ABI \
# -DCPACK_GENERATOR="STGZ;DEB;RPM" \
# -DCPACK_PACKAGE_CONTACT="csg-devel@umich.edu" \
# -DCPACK_ARCHIVE_COMPONENT_INSTALL=ON \
# -DCPACK_DEB_COMPONENT_INSTALL=ON \
# -DCPACK_RPM_COMPONENT_INSTALL=ON \
# -DCPACK_COMPONENTS_ALL=api \
# ${src_dir}
#
##make savvy
#make package
#cp savvy-*.{sh,deb,rpm} ${out_dir}/
#cd ..
#
#
## libsavvy.so new abi
#mkdir build-api-cxx11-abi
#cd build-api-cxx11-abi
#cmake \
# -DCMAKE_BUILD_TYPE=Release \
# -DCMAKE_TOOLCHAIN_FILE=/cget/cget/cget.cmake \
# -DBUILD_SHARED_LIBS=ON \
# -DCMAKE_CXX_FLAGS="-static-libstdc++" \
# -DCPACK_GENERATOR="STGZ;DEB;RPM" \
# -DCPACK_PACKAGE_CONTACT="csg-devel@umich.edu" \
# -DCPACK_ARCHIVE_COMPONENT_INSTALL=ON \
# -DCPACK_DEB_COMPONENT_INSTALL=ON \
# -DCPACK_RPM_COMPONENT_INSTALL=ON \
# -DCPACK_COMPONENTS_ALL=api \
# ${src_dir}
#
##make savvy
#make package
#cp savvy-*.{sh,deb,rpm} ${out_dir}/
#cd ..
# sav cli statically linked
mkdir build-cli
cd build-cli
cmake \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_TOOLCHAIN_FILE=/cget/cget/cget.cmake \
-DCMAKE_BUILD_WITH_INSTALL_RPATH=ON \
-DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
-DCPACK_GENERATOR="STGZ;DEB;RPM" \
-DCPACK_PACKAGE_CONTACT="csg-devel@umich.edu" \
-DCPACK_ARCHIVE_COMPONENT_INSTALL=ON \
-DCPACK_DEB_COMPONENT_INSTALL=ON \
-DCPACK_RPM_COMPONENT_INSTALL=ON \
-DCPACK_COMPONENTS_ALL=cli \
${src_dir}
make sav manuals
make package
cp savvy-*.{sh,deb,rpm} ${out_dir}/
cd ..
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