1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
|
function SBMLCompartment = Compartment_setSpatialDimensions(SBMLCompartment, spatialDimensions)
% SBMLCompartment = Compartment_setSpatialDimensions(SBMLCompartment, spatialDimensions)
%
% Takes
%
% 1. SBMLCompartment, an SBML Compartment structure
% 2. spatialDimensions; number representing the value of spatialDimensions to be set
%
% Returns
%
% 1. the SBML Compartment structure with the new value for the spatialDimensions attribute
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
%get level and version and check the input arguments are appropriate
[level, version] = GetLevelVersion(SBMLCompartment);
if isfield(SBMLCompartment, 'spatialDimensions')
if (level > 2 && ~isnumeric(spatialDimensions))
error('spatialDimensions must be numeric') ;
elseif (level < 3 && (~isIntegralNumber(spatialDimensions) ...
|| spatialDimensions < 0 || spatialDimensions > 3))
error('spatialDimensions must be integer values 0, 1, 2, or 3');
else
SBMLCompartment.spatialDimensions = spatialDimensions;
if (isfield(SBMLCompartment, 'isSetSpatialDimensions'))
SBMLCompartment.isSetSpatialDimensions = 1;
end;
end;
else
error('spatialDimensions not an attribute on SBML L%dV%d Compartment', level, version);
end;
|