1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
|
function functionDefinition = Model_getFunctionDefinitionById(SBMLModel, id)
% functionDefinition = Model_getFunctionDefinitionById(SBMLModel, id)
%
% Takes
%
% 1. SBMLModel, an SBML Model structure
% 2. id; a string representing the id of SBML FunctionDefinition structure
%
% Returns
%
% 1. the SBML FunctionDefinition structure that has this id
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
% check that input is correct
if (~isValidSBML_Model(SBMLModel))
error(sprintf('%s\n%s', 'Model_getFunctionDefinitionById(SBMLModel, id)', 'first argument must be an SBML model structure'));
elseif (SBMLModel.SBML_level == 1)
error(sprintf('%s\n%s', 'Model_getFunctionDefinitionById(SBMLModel, id)', 'no function definitions in a level 1 model'));
elseif (~ischar(id))
error(sprintf('%s\n%s', 'Model_getFunctionDefinitionById(SBMLModel, id)', 'second argument must be a string'));
end;
functionDefinition = [];
for i = 1:length(SBMLModel.functionDefinition)
if (strcmp(id, SBMLModel.functionDefinition(i).id))
functionDefinition = SBMLModel.functionDefinition(i);
break;
end;
end;
%if level and version fields are not on returned object add them
if ~isempty(functionDefinition) && ~isfield(functionDefinition, 'level')
functionDefinition.level = SBMLModel.SBML_level;
functionDefinition.version = SBMLModel.SBML_version;
end;
|
