1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
|
% toolbox\MATLAB_SBML_Structure_Functions\ModifierSpeciesReference
%
% The functions allow users to create and work with the SBML ModifierSpeciesReference structure.
%
%=================================================================================================
% ModifierSpeciesReference = ModifierSpeciesReference_create(level(optional), version(optional) )
%=================================================================================================
% Takes
% 1. level, an integer representing an SBML level (optional)
% 2. version, an integer representing an SBML version (optional)
% Returns
% 1. a MATLAB_SBML ModifierSpeciesReference structure of the appropriate level and version
%
%===================================================================
% id = ModifierSpeciesReference_getId(SBMLModifierSpeciesReference)
%===================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the value of the id attribute
%
%===========================================================================
% metaid = ModifierSpeciesReference_getMetaid(SBMLModifierSpeciesReference)
%===========================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the value of the metaid attribute
%
%=======================================================================
% name = ModifierSpeciesReference_getName(SBMLModifierSpeciesReference)
%=======================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the value of the name attribute
%
%=============================================================================
% sboTerm = ModifierSpeciesReference_getSBOTerm(SBMLModifierSpeciesReference)
%=============================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the value of the sboTerm attribute
%
%=============================================================================
% species = ModifierSpeciesReference_getSpecies(SBMLModifierSpeciesReference)
%=============================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the value of the species attribute
%
%========================================================================
% value = ModifierSpeciesReference_isSetId(SBMLModifierSpeciesReference)
%========================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. value =
% - 1 if the id attribute is set
% - 0 otherwise
%
%============================================================================
% value = ModifierSpeciesReference_isSetMetaid(SBMLModifierSpeciesReference)
%============================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. value =
% - 1 if the metaid attribute is set
% - 0 otherwise
%
%==========================================================================
% value = ModifierSpeciesReference_isSetName(SBMLModifierSpeciesReference)
%==========================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. value =
% - 1 if the name attribute is set
% - 0 otherwise
%
%=============================================================================
% value = ModifierSpeciesReference_isSetSBOTerm(SBMLModifierSpeciesReference)
%=============================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. value =
% - 1 if the sboTerm attribute is set
% - 0 otherwise
%
%=============================================================================
% value = ModifierSpeciesReference_isSetSpecies(SBMLModifierSpeciesReference)
%=============================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. value =
% - 1 if the species attribute is set
% - 0 otherwise
%
%=================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_setId(SBMLModifierSpeciesReference, id)
%=================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% 2. id; a string representing the id to be set
% Returns
% 1. the SBML ModifierSpeciesReference structure with the new value for the id attribute
%
%=========================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_setMetaid(SBMLModifierSpeciesReference, metaid)
%=========================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% 2. metaid; a string representing the metaid to be set
% Returns
% 1. the SBML ModifierSpeciesReference structure with the new value for the metaid attribute
%
%=====================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_setName(SBMLModifierSpeciesReference, name)
%=====================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% 2. name; a string representing the name to be set
% Returns
% 1. the SBML ModifierSpeciesReference structure with the new value for the name attribute
%
%===========================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_setSBOTerm(SBMLModifierSpeciesReference, sboTerm)
%===========================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% 2. sboTerm, an integer representing the sboTerm to be set
% Returns
% 1. the SBML ModifierSpeciesReference structure with the new value for the sboTerm attribute
%
%===========================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_setSpecies(SBMLModifierSpeciesReference, species)
%===========================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% 2. species; a string representing the species to be set
% Returns
% 1. the SBML ModifierSpeciesReference structure with the new value for the species attribute
%
%===============================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_unsetId(SBMLModifierSpeciesReference)
%===============================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the SBML ModifierSpeciesReference structure with the id attribute unset
%
%===================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_unsetMetaid(SBMLModifierSpeciesReference)
%===================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the SBML ModifierSpeciesReference structure with the metaid attribute unset
%
%=================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_unsetName(SBMLModifierSpeciesReference)
%=================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the SBML ModifierSpeciesReference structure with the name attribute unset
%
%====================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_unsetSBOTerm(SBMLModifierSpeciesReference)
%====================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the SBML ModifierSpeciesReference structure with the sboTerm attribute unset
%
%====================================================================================================
% SBMLModifierSpeciesReference = ModifierSpeciesReference_unsetSpecies(SBMLModifierSpeciesReference)
%====================================================================================================
% Takes
% 1. SBMLModifierSpeciesReference, an SBML ModifierSpeciesReference structure
% Returns
% 1. the SBML ModifierSpeciesReference structure with the species attribute unset
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
|
