File: Reaction_getProductById.m

package info (click to toggle)
sbmltoolbox 4.1.0-5.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 7,032 kB
  • sloc: xml: 2,438; makefile: 8; sh: 7
file content (66 lines) | stat: -rw-r--r-- 2,381 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
function product = Reaction_getProductById(SBMLReaction, id)
% product = Reaction_getProductById(SBMLReaction, id)
%
% Takes
%
% 1. SBMLReaction, an SBML Reaction structure
% 2. id; a string representing the id of SBML Product structure
%
% Returns
%
% 1. the SBML Product structure that has this id
%

%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox.  Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations: 
%     1. California Institute of Technology, Pasadena, CA, USA
%     2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations: 
%     1. California Institute of Technology, Pasadena, CA, USA
%     2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations: 
%     1. California Institute of Technology, Pasadena, CA, USA 
%     2. Japan Science and Technology Agency, Japan
%     3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation.  A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->







% check that input is correct
if (~isstruct(SBMLReaction))
  error(sprintf('%s', ...
    'first argument must be an SBML Reaction structure'));
end;
 
[sbmlLevel, sbmlVersion] = GetLevelVersion(SBMLReaction);

if (~isSBML_Reaction(SBMLReaction, sbmlLevel, sbmlVersion))
    error(sprintf('%s\n%s', 'Reaction_getProductById(SBMLReaction, id)', 'first argument must be an SBML model structure'));
elseif (~ischar(id))
    error(sprintf('%s\n%s', 'Reaction_getProductById(SBMLReaction, id)', 'second argument must be a string'));
elseif (sbmlLevel ~= 2)
    error(sprintf('%s\n%s', 'Reaction_getProductById(SBMLReaction, id)', 'no id field in a level 1 model'));   
end;

product = [];

for i = 1:length(SBMLReaction.product)
    if (strcmp(id, SBMLReaction.product(i).species))
        product = SBMLReaction.product(i);
        return;
    end;
end;