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function SBMLSpeciesReference = SpeciesReference_setStoichiometryMath(SBMLSpeciesReference, stoichiometryMath)
% SBMLSpeciesReference = SpeciesReference_setStoichiometryMath(SBMLSpeciesReference, SBMLStoichiometryMath)
%
% Takes
%
% 1. SBMLSpeciesReference, an SBML SpeciesReference structure
% 2. SBMLStoichiometryMath, an SBML StoichiometryMath structure
%
% Returns
%
% 1. the SBML SpeciesReference structure with the new value for the stoichiometryMath field
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
%get level and version and check the input arguments are appropriate
[level, version] = GetLevelVersion(SBMLSpeciesReference);
if isstruct(stoichiometryMath)
[sm_level, sm_version] = GetLevelVersion(stoichiometryMath);
if level ~= sm_level
error('mismatch in levels');
elseif version ~= sm_version
error('mismatch in versions');
end;
end;
if isfield(SBMLSpeciesReference, 'stoichiometryMath')
if (level == 2 && version < 3) && ~ischar(stoichiometryMath)
error('stoichiometryMath must be character array') ;
elseif (((level == 2 && version > 2) || level > 2) ...
&& ~isValid(stoichiometryMath, level, version))
error('stoichiometryMath must be an SBML StoichiometryMath structure');
else
SBMLSpeciesReference.stoichiometryMath = stoichiometryMath;
end;
else
error('stoichiometryMath not an attribute on SBML L%dV%d SpeciesReference', level, version);
end;
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