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function [fail, num, message] = testModel()
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
fail = 0;
num = 0;
message = {};
warning('off', 'Warn:InvalidLV');
disp('Testing Model');
disp('Testing L1V1');
obj = Model_create(1, 1);
attributes = {...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'UnitDefinition', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'Rule', 9}...
{'Reaction', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L1V2');
obj = Model_create(1, 2);
attributes = {...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'UnitDefinition', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'Rule', 9}...
{'Reaction', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L2V1');
obj = Model_create(2, 1);
attributes = {...
{'Metaid', 1}...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'Id', 1}...
{'FunctionDefinition', 9}...
{'UnitDefinition', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'Rule', 9}...
{'Reaction', 9}...
{'Event', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L2V2');
obj = Model_create(2, 2);
attributes = {...
{'Metaid', 1}...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'Id', 1}...
{'SBOTerm', 2}...
{'FunctionDefinition', 9}...
{'UnitDefinition', 9}...
{'CompartmentType', 9}...
{'SpeciesType', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'InitialAssignment', 9}...
{'Rule', 9}...
{'Constraint', 9}...
{'Reaction', 9}...
{'Event', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L2V3');
obj = Model_create(2, 3);
attributes = {...
{'Metaid', 1}...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'Id', 1}...
{'SBOTerm', 2}...
{'FunctionDefinition', 9}...
{'UnitDefinition', 9}...
{'CompartmentType', 9}...
{'SpeciesType', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'InitialAssignment', 9}...
{'Rule', 9}...
{'Constraint', 9}...
{'Reaction', 9}...
{'Event', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L2V4');
obj = Model_create(2, 4);
attributes = {...
{'Metaid', 1}...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'Id', 1}...
{'SBOTerm', 2}...
{'FunctionDefinition', 9}...
{'UnitDefinition', 9}...
{'CompartmentType', 9}...
{'SpeciesType', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'InitialAssignment', 9}...
{'Rule', 9}...
{'Constraint', 9}...
{'Reaction', 9}...
{'Event', 9}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp('Testing L3V1');
obj = Model_create(3, 1);
attributes = {...
{'Metaid', 1}...
{'SBML_level', 10}...
{'SBML_version', 10}...
{'Name', 1}...
{'Id', 1}...
{'SBOTerm', 2}...
{'FunctionDefinition', 9}...
{'UnitDefinition', 9}...
{'Compartment', 9}...
{'Species', 9}...
{'Parameter', 9}...
{'InitialAssignment', 9}...
{'Rule', 9}...
{'Constraint', 9}...
{'Reaction', 9}...
{'Event', 9}...
{'SubstanceUnits', 1}...
{'TimeUnits', 1}...
{'LengthUnits', 1}...
{'AreaUnits', 1}...
{'VolumeUnits', 1}...
{'ExtentUnits', 1}...
{'ConversionFactor', 1}...
};
[fail, num, message] = testObject(obj, attributes, 'Model', fail, num, message);
disp(sprintf('Number tests: %d', num));
disp(sprintf('Number fails: %d', fail));
disp(sprintf('Pass rate: %d%%', ((num-fail)/num)*100));
warning('on', 'Warn:InvalidLV');
|
