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function [fail, num, message] = testSpecies()
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
fail = 0;
num = 0;
message = {};
warning('off', 'Warn:InvalidLV');
disp('Testing Species');
disp('Testing L1V1');
obj = Species_create(1, 1);
attributes = {...
{'Name', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'Units', 1}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L1V2');
obj = Species_create(1, 2);
attributes = {...
{'Name', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'Units', 1}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L2V1');
obj = Species_create(2, 1);
attributes = {...
{'Metaid', 1}...
{'Name', 1}...
{'Id', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'InitialConcentration', 3}...
{'SubstanceUnits', 1}...
{'SpatialSizeUnits', 1}...
{'HasOnlySubstanceUnits', 7}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
{'Constant', 7}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L2V2');
obj = Species_create(2, 2);
attributes = {...
{'Metaid', 1}...
{'Name', 1}...
{'Id', 1}...
{'SpeciesType', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'InitialConcentration', 3}...
{'SubstanceUnits', 1}...
{'SpatialSizeUnits', 1}...
{'HasOnlySubstanceUnits', 7}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
{'Constant', 7}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L2V3');
obj = Species_create(2, 3);
attributes = {...
{'Metaid', 1}...
{'SBOTerm', 2}...
{'Name', 1}...
{'Id', 1}...
{'SpeciesType', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'InitialConcentration', 3}...
{'SubstanceUnits', 1}...
{'HasOnlySubstanceUnits', 7}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
{'Constant', 7}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L2V4');
obj = Species_create(2, 4);
attributes = {...
{'Metaid', 1}...
{'SBOTerm', 2}...
{'Name', 1}...
{'Id', 1}...
{'SpeciesType', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'InitialConcentration', 3}...
{'SubstanceUnits', 1}...
{'HasOnlySubstanceUnits', 7}...
{'BoundaryCondition', 7}...
{'Charge', 5}...
{'Constant', 7}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp('Testing L3V1');
obj = Species_create(3, 1);
attributes = {...
{'Metaid', 1}...
{'SBOTerm', 2}...
{'Name', 1}...
{'Id', 1}...
{'Compartment', 1}...
{'InitialAmount', 3}...
{'InitialConcentration', 3}...
{'SubstanceUnits', 1}...
{'HasOnlySubstanceUnits', 7}...
{'BoundaryCondition', 7}...
{'Constant', 7}...
{'ConversionFactor', 1}...
};
[fail, num, message] = testObject(obj, attributes, 'Species', fail, num, message);
disp(sprintf('Number tests: %d', num));
disp(sprintf('Number fails: %d', fail));
disp(sprintf('Pass rate: %d%%', ((num-fail)/num)*100));
warning('on', 'Warn:InvalidLV');
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