1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
|
% toolbox\fbc_package\Validate_MATLAB_SBML_Structures
%
% This folder contains tests that checks that the structure supplied as argument
% is of the appropriate form to represent the intended element of an SBML model
% that includes the fbc package.
%
%=======================================================================================
% [valid, message] = isSBML_FBC_FluxBound(SBMLFBCFluxBound, level, version, pkgVersion)
%=======================================================================================
% Takes
% 1. SBMLStructure, an SBML FBC FluxBound structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing an FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC FluxBound structure of the appropriate
% level, version and FBC version
% - 0, otherwise
% 2. a message explaining any failure
%
%===============================================================================================
% [valid, message] = isSBML_FBC_FluxObjective(SBMLFBCFluxObjective, level, version, pkgVersion)
%===============================================================================================
% Takes
% 1. SBMLStructure, an SBML FBC FluxObjective structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing an FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC FluxObjective structure of the appropriate
% level, version and FBC version
% - 0, otherwise
% 2. a message explaining any failure
%
%===============================================================================
% [valid, message] = isSBML_FBC_Model(SBMLFBCModel, level, version, pkgVersion)
%===============================================================================
% Takes
% 1. SBMLStructure, an SBML FBC Model structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing an FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC Model structure of the appropriate
% level, version and FBC version
% - 0, otherwise
% 2. a message explaining any failure
%
%=======================================================================================
% [valid, message] = isSBML_FBC_Objective(SBMLFBCObjective, level, version, pkgVersion)
%=======================================================================================
% Takes
% 1. SBMLStructure, an SBML FBC Objective structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing an FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC Objective structure of the appropriate
% level, version and FBC version
% - 0, otherwise
% 2. a message explaining any failure
%
%===================================================================================
% [valid, message] = isSBML_FBC_Species(SBMLFBCSpecies, level, version, pkgVersion)
%===================================================================================
% Takes
% 1. SBMLStructure, an SBML FBC Species structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing an FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC Species structure of the appropriate
% level, version and FBC version
% - 0, otherwise
% 2. a message explaining any failure
%
%=======================================================================
% [valid, message] = isValidFBC(SBMLStruct, level, version, pkgVersion)
%=======================================================================
% Takes
% 1. SBMLStruct, an SBML structure
% 2. level, an integer representing an SBML level
% 3. version, an integer representing an SBML version
% 4. pkgVersion, an integer representing the FBC package version
% Returns
% 1. valid =
% - 1, if the structure represents
% a MATLAB_SBML FBC structure of the appropriate
% level and version
% - 0, otherwise
% 2. a message explaining any failure
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
|
