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function y = test_fbc_valid(varargin)
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
fbcBindingEnabled = 1;
if (nargin == 0)
if isBindingFbcEnabled() == 0
disp ('The libsbml binding for fbc is not enabled');
disp ('not all tests can be run');
fbcBindingEnabled = 0;
end;
else
fbcBindingEnabled = varargin{1};
end;
test = 0;
Totalfail = 0;
test = test + 44;
fail = TestIsSBML_FBC_FluxBound;
if (fail > 0)
disp('isSBML_FBC_FluxBound failed');
end;
Totalfail = Totalfail + fail;
test = test + 66;
fail = TestIsSBML_FBC_Objective;
if (fail > 0)
disp('isSBML_FBC_Objective failed');
end;
Totalfail = Totalfail + fail;
test = test + 44;
fail = TestIsSBML_FBC_FluxObjective;
if (fail > 0)
disp('isSBML_FBC_FluxObjective failed');
end;
Totalfail = Totalfail + fail;
test = test + 42;
fail = TestIsSBML_FBC_Species;
if (fail > 0)
disp('isSBML_FBC_Species failed');
end;
Totalfail = Totalfail + fail;
test = test + 22;
fail = TestIsSBML_FBC_Model;
if (fail > 0)
disp('isSBML_FBC_Model failed');
end;
Totalfail = Totalfail + fail;
% tests that need fbc libsbml binding enabled
if fbcBindingEnabled == 1
m = TranslateSBML('../../test/test-data/fbc.xml');
fb = m.fbc_fluxBound(1);
o = m.fbc_objective(1);
fo = o.fbc_fluxObjective(1);
s = m.species(1);
test = test + 7;
fail = 0;
pass = isValidSBML_Model(m);
if (pass == 0)
fail = fail + 1;
disp('l3v1 Model failed');
end;
pass = isSBML_FBC_Model(m, 3, 1, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 fbc Model failed');
end;
pass = isSBML_FBC_FluxBound(fb,3, 1, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 FluxBound failed');
end;
pass = isSBML_FBC_Objective(o,3, 1, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 Objective failed');
end;
pass = isSBML_FBC_FluxObjective(fo,3, 1, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 FluxObjective failed');
end;
pass = isSBML_Species(s, 3, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 Species failed');
end;
pass = isSBML_FBC_Species(s, 3, 1, 1);
if (pass == 0)
fail = fail + 1;
disp('l3v1 FBC Species failed');
end;
end;
Totalfail = Totalfail + fail;
disp(sprintf('Number tests: %d', test));
disp(sprintf('Number fails: %d', Totalfail));
disp(sprintf('Pass rate: %d%%', ((test-Totalfail)/test)*100));
y = Totalfail;
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