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"""
Example generation for the scikit learn
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'
"""
from time import time
import os
import shutil
import traceback
import glob
import sys
from StringIO import StringIO
import matplotlib
matplotlib.use('Agg')
import token
import tokenize
rst_template = """
.. _example_%(short_fname)s:
%(docstring)s
**Python source code:** :download:`%(fname)s <%(fname)s>`
.. literalinclude:: %(fname)s
:lines: %(end_row)s-
"""
plot_rst_template = """
.. _example_%(short_fname)s:
%(docstring)s
%(image_list)s
%(stdout)s
**Python source code:** :download:`%(fname)s <%(fname)s>`
.. literalinclude:: %(fname)s
:lines: %(end_row)s-
"""
# The following strings are used when we have several pictures: we use
# an html div tag that our CSS uses to turn the lists into horizontal
# lists.
HLIST_HEADER = """
.. rst-class:: horizontal
"""
HLIST_IMAGE_TEMPLATE = """
*
.. image:: images/%s
:scale: 47
"""
SINGLE_IMAGE = """
.. image:: images/%s
:align: center
"""
def extract_docstring(filename):
""" Extract a module-level docstring, if any
"""
lines = file(filename).readlines()
start_row = 0
if lines[0].startswith('#!'):
lines.pop(0)
start_row = 1
docstring = ''
first_par = ''
tokens = tokenize.generate_tokens(lines.__iter__().next)
for tok_type, tok_content, _, (erow, _), _ in tokens:
tok_type = token.tok_name[tok_type]
if tok_type in ('NEWLINE', 'COMMENT', 'NL', 'INDENT', 'DEDENT'):
continue
elif tok_type == 'STRING':
docstring = eval(tok_content)
# If the docstring is formatted with several paragraphs, extract
# the first one:
paragraphs = '\n'.join(line.rstrip()
for line in docstring.split('\n')).split('\n\n')
if len(paragraphs) > 0:
first_par = paragraphs[0]
break
return docstring, first_par, erow + 1 + start_row
def generate_example_rst(app):
""" Generate the list of examples, as well as the contents of
examples.
"""
root_dir = os.path.join(app.builder.srcdir, 'auto_examples')
example_dir = os.path.abspath(app.builder.srcdir + '/../' + 'examples')
try:
plot_gallery = eval(app.builder.config.plot_gallery)
except TypeError:
plot_gallery = bool(app.builder.config.plot_gallery)
if not os.path.exists(example_dir):
os.makedirs(example_dir)
if not os.path.exists(root_dir):
os.makedirs(root_dir)
# we create an index.rst with all examples
fhindex = file(os.path.join(root_dir, 'index.rst'), 'w')
#Note: The sidebar button has been removed from the examples page for now
# due to how it messes up the layout. Will be fixed at a later point
fhindex.write("""\
.. raw:: html
<style type="text/css">
div#sidebarbutton {
display: none;
}
.figure {
float: left;
margin: 10px;
width: auto;
height: 200px;
width: 180px;
}
.figure img {
display: inline;
}
.figure .caption {
width: 170px;
text-align: center !important;
}
</style>
Examples
========
.. _examples-index:
""")
# Here we don't use an os.walk, but we recurse only twice: flat is
# better than nested.
generate_dir_rst('.', fhindex, example_dir, root_dir, plot_gallery)
for dir in sorted(os.listdir(example_dir)):
if os.path.isdir(os.path.join(example_dir, dir)):
generate_dir_rst(dir, fhindex, example_dir, root_dir, plot_gallery)
fhindex.flush()
def generate_dir_rst(dir, fhindex, example_dir, root_dir, plot_gallery):
""" Generate the rst file for an example directory.
"""
if not dir == '.':
target_dir = os.path.join(root_dir, dir)
src_dir = os.path.join(example_dir, dir)
else:
target_dir = root_dir
src_dir = example_dir
if not os.path.exists(os.path.join(src_dir, 'README.txt')):
print 80 * '_'
print ('Example directory %s does not have a README.txt file'
% src_dir)
print 'Skipping this directory'
print 80 * '_'
return
fhindex.write("""
%s
""" % file(os.path.join(src_dir, 'README.txt')).read())
if not os.path.exists(target_dir):
os.makedirs(target_dir)
def sort_key(a):
# put last elements without a plot
if not a.startswith('plot') and a.endswith('.py'):
return 'zz' + a
return a
for fname in sorted(os.listdir(src_dir), key=sort_key):
if fname.endswith('py'):
generate_file_rst(fname, target_dir, src_dir, plot_gallery)
thumb = os.path.join(dir, 'images', 'thumb', fname[:-3] + '.png')
link_name = os.path.join(dir, fname).replace(os.path.sep, '_')
fhindex.write('.. figure:: %s\n' % thumb)
if link_name.startswith('._'):
link_name = link_name[2:]
if dir != '.':
fhindex.write(' :target: ./%s/%s.html\n\n' % (dir,
fname[:-3]))
else:
fhindex.write(' :target: ./%s.html\n\n' % link_name[:-3])
fhindex.write(""" :ref:`example_%s`
.. toctree::
:hidden:
%s/%s
""" % (link_name, dir, fname[:-3]))
fhindex.write("""
.. raw:: html
<div style="clear: both"></div>
""") # clear at the end of the section
def generate_file_rst(fname, target_dir, src_dir, plot_gallery):
""" Generate the rst file for a given example.
"""
base_image_name = os.path.splitext(fname)[0]
image_fname = '%s_%%s.png' % base_image_name
this_template = rst_template
last_dir = os.path.split(src_dir)[-1]
# to avoid leading . in file names, and wrong names in links
if last_dir == '.' or last_dir == 'examples':
last_dir = ''
else:
last_dir += '_'
short_fname = last_dir + fname
src_file = os.path.join(src_dir, fname)
example_file = os.path.join(target_dir, fname)
shutil.copyfile(src_file, example_file)
# The following is a list containing all the figure names
figure_list = []
image_dir = os.path.join(target_dir, 'images')
thumb_dir = os.path.join(image_dir, 'thumb')
if not os.path.exists(image_dir):
os.makedirs(image_dir)
if not os.path.exists(thumb_dir):
os.makedirs(thumb_dir)
image_path = os.path.join(image_dir, image_fname)
stdout_path = os.path.join(image_dir,
'stdout_%s.txt' % base_image_name)
thumb_file = os.path.join(thumb_dir, fname[:-3] + '.png')
if plot_gallery and fname.startswith('plot'):
# generate the plot as png image if file name
# starts with plot and if it is more recent than an
# existing image.
first_image_file = image_path % 1
if os.path.exists(stdout_path):
stdout = open(stdout_path).read()
else:
stdout = ''
if (not os.path.exists(first_image_file) or
os.stat(first_image_file).st_mtime <=
os.stat(src_file).st_mtime):
# We need to execute the code
print 'plotting %s' % fname
t0 = time()
import matplotlib.pyplot as plt
plt.close('all')
cwd = os.getcwd()
try:
# First CD in the original example dir, so that any file
# created by the example get created in this directory
orig_stdout = sys.stdout
os.chdir(os.path.dirname(src_file))
my_stdout = StringIO()
sys.stdout = my_stdout
my_globals = {'pl': plt}
execfile(os.path.basename(src_file), my_globals)
sys.stdout = orig_stdout
my_stdout = my_stdout.getvalue()
if '__doc__' in my_globals:
# The __doc__ is often printed in the example, we
# don't with to echo it
my_stdout = my_stdout.replace(
my_globals['__doc__'],
'')
my_stdout = my_stdout.strip()
if my_stdout:
stdout = '**Script output**::\n\n %s\n\n' % (
'\n '.join(my_stdout.split('\n')))
open(stdout_path, 'w').write(stdout)
os.chdir(cwd)
# In order to save every figure we have two solutions :
# * iterate from 1 to infinity and call plt.fignum_exists(n)
# (this requires the figures to be numbered
# incrementally: 1, 2, 3 and not 1, 2, 5)
# * iterate over [fig_mngr.num for fig_mngr in
# matplotlib._pylab_helpers.Gcf.get_all_fig_managers()]
for fig_num in (fig_mngr.num for fig_mngr in
matplotlib._pylab_helpers.Gcf.get_all_fig_managers()):
# Set the fig_num figure as the current figure as we can't
# save a figure that's not the current figure.
plt.figure(fig_num)
plt.savefig(image_path % fig_num)
figure_list.append(image_fname % fig_num)
except:
print 80 * '_'
print '%s is not compiling:' % fname
traceback.print_exc()
print 80 * '_'
finally:
os.chdir(cwd)
sys.stdout = orig_stdout
print " - time elapsed : %.2g sec" % (time() - t0)
else:
figure_list = [f[len(image_dir):]
for f in glob.glob(image_path % '[1-9]')]
#for f in glob.glob(image_path % '*')]
# generate thumb file
this_template = plot_rst_template
from matplotlib import image
if os.path.exists(first_image_file):
image.thumbnail(first_image_file, thumb_file, 0.2)
if not os.path.exists(thumb_file):
# create something not to replace the thumbnail
shutil.copy('images/blank_image.png', thumb_file)
docstring, short_desc, end_row = extract_docstring(example_file)
# Depending on whether we have one or more figures, we're using a
# horizontal list or a single rst call to 'image'.
if len(figure_list) == 1:
figure_name = figure_list[0]
image_list = SINGLE_IMAGE % figure_name.lstrip('/')
else:
image_list = HLIST_HEADER
for figure_name in figure_list:
image_list += HLIST_IMAGE_TEMPLATE % figure_name.lstrip('/')
f = open(os.path.join(target_dir, fname[:-2] + 'rst'), 'w')
f.write(this_template % locals())
f.flush()
def setup(app):
app.connect('builder-inited', generate_example_rst)
app.add_config_value('plot_gallery', True, 'html')
# Sphinx hack: sphinx copies generated images to the build directory
# each time the docs are made. If the desired image name already
# exists, it appends a digit to prevent overwrites. The problem is,
# the directory is never cleared. This means that each time you build
# the docs, the number of images in the directory grows.
#
# This question has been asked on the sphinx development list, but there
# was no response: http://osdir.com/ml/sphinx-dev/2011-02/msg00123.html
#
# The following is a hack that prevents this behavior by clearing the
# image build directory each time the docs are built. If sphinx
# changes their layout between versions, this will not work (though
# it should probably not cause a crash). Tested successfully
# on Sphinx 1.0.7
build_image_dir = '_build/html/_images'
if os.path.exists(build_image_dir):
filelist = os.listdir(build_image_dir)
for filename in filelist:
if filename.endswith('png'):
os.remove(os.path.join(build_image_dir, filename))
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