1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365
|
import os
import shutil
import tempfile
import warnings
from functools import partial
from importlib import resources
from pathlib import Path
from pickle import dumps, loads
import numpy as np
import pytest
from sklearn.datasets import (
clear_data_home,
get_data_home,
load_breast_cancer,
load_diabetes,
load_digits,
load_files,
load_iris,
load_linnerud,
load_sample_image,
load_sample_images,
load_wine,
)
from sklearn.datasets._base import (
load_csv_data,
load_gzip_compressed_csv_data,
)
from sklearn.datasets.tests.test_common import check_as_frame
from sklearn.preprocessing import scale
from sklearn.utils import Bunch
class _DummyPath:
"""Minimal class that implements the os.PathLike interface."""
def __init__(self, path):
self.path = path
def __fspath__(self):
return self.path
def _remove_dir(path):
if os.path.isdir(path):
shutil.rmtree(path)
@pytest.fixture(scope="module")
def data_home(tmpdir_factory):
tmp_file = str(tmpdir_factory.mktemp("scikit_learn_data_home_test"))
yield tmp_file
_remove_dir(tmp_file)
@pytest.fixture(scope="module")
def load_files_root(tmpdir_factory):
tmp_file = str(tmpdir_factory.mktemp("scikit_learn_load_files_test"))
yield tmp_file
_remove_dir(tmp_file)
@pytest.fixture
def test_category_dir_1(load_files_root):
test_category_dir1 = tempfile.mkdtemp(dir=load_files_root)
sample_file = tempfile.NamedTemporaryFile(dir=test_category_dir1, delete=False)
sample_file.write(b"Hello World!\n")
sample_file.close()
yield str(test_category_dir1)
_remove_dir(test_category_dir1)
@pytest.fixture
def test_category_dir_2(load_files_root):
test_category_dir2 = tempfile.mkdtemp(dir=load_files_root)
yield str(test_category_dir2)
_remove_dir(test_category_dir2)
@pytest.mark.parametrize("path_container", [None, Path, _DummyPath])
def test_data_home(path_container, data_home):
# get_data_home will point to a pre-existing folder
if path_container is not None:
data_home = path_container(data_home)
data_home = get_data_home(data_home=data_home)
assert data_home == data_home
assert os.path.exists(data_home)
# clear_data_home will delete both the content and the folder it-self
if path_container is not None:
data_home = path_container(data_home)
clear_data_home(data_home=data_home)
assert not os.path.exists(data_home)
# if the folder is missing it will be created again
data_home = get_data_home(data_home=data_home)
assert os.path.exists(data_home)
def test_default_empty_load_files(load_files_root):
res = load_files(load_files_root)
assert len(res.filenames) == 0
assert len(res.target_names) == 0
assert res.DESCR is None
def test_default_load_files(test_category_dir_1, test_category_dir_2, load_files_root):
res = load_files(load_files_root)
assert len(res.filenames) == 1
assert len(res.target_names) == 2
assert res.DESCR is None
assert res.data == [b"Hello World!\n"]
def test_load_files_w_categories_desc_and_encoding(
test_category_dir_1, test_category_dir_2, load_files_root
):
category = os.path.abspath(test_category_dir_1).split(os.sep).pop()
res = load_files(
load_files_root, description="test", categories=[category], encoding="utf-8"
)
assert len(res.filenames) == 1
assert len(res.target_names) == 1
assert res.DESCR == "test"
assert res.data == ["Hello World!\n"]
def test_load_files_wo_load_content(
test_category_dir_1, test_category_dir_2, load_files_root
):
res = load_files(load_files_root, load_content=False)
assert len(res.filenames) == 1
assert len(res.target_names) == 2
assert res.DESCR is None
assert res.get("data") is None
@pytest.mark.parametrize("allowed_extensions", ([".txt"], [".txt", ".json"]))
def test_load_files_allowed_extensions(tmp_path, allowed_extensions):
"""Check the behaviour of `allowed_extension` in `load_files`."""
d = tmp_path / "sub"
d.mkdir()
files = ("file1.txt", "file2.json", "file3.json", "file4.md")
paths = [d / f for f in files]
for p in paths:
p.write_bytes(b"hello")
res = load_files(tmp_path, allowed_extensions=allowed_extensions)
assert set([str(p) for p in paths if p.suffix in allowed_extensions]) == set(
res.filenames
)
@pytest.mark.parametrize(
"filename, expected_n_samples, expected_n_features, expected_target_names",
[
("wine_data.csv", 178, 13, ["class_0", "class_1", "class_2"]),
("iris.csv", 150, 4, ["setosa", "versicolor", "virginica"]),
("breast_cancer.csv", 569, 30, ["malignant", "benign"]),
],
)
def test_load_csv_data(
filename, expected_n_samples, expected_n_features, expected_target_names
):
actual_data, actual_target, actual_target_names = load_csv_data(filename)
assert actual_data.shape[0] == expected_n_samples
assert actual_data.shape[1] == expected_n_features
assert actual_target.shape[0] == expected_n_samples
np.testing.assert_array_equal(actual_target_names, expected_target_names)
def test_load_csv_data_with_descr():
data_file_name = "iris.csv"
descr_file_name = "iris.rst"
res_without_descr = load_csv_data(data_file_name=data_file_name)
res_with_descr = load_csv_data(
data_file_name=data_file_name, descr_file_name=descr_file_name
)
assert len(res_with_descr) == 4
assert len(res_without_descr) == 3
np.testing.assert_array_equal(res_with_descr[0], res_without_descr[0])
np.testing.assert_array_equal(res_with_descr[1], res_without_descr[1])
np.testing.assert_array_equal(res_with_descr[2], res_without_descr[2])
assert res_with_descr[-1].startswith(".. _iris_dataset:")
@pytest.mark.parametrize(
"filename, kwargs, expected_shape",
[
("diabetes_data_raw.csv.gz", {}, [442, 10]),
("diabetes_target.csv.gz", {}, [442]),
("digits.csv.gz", {"delimiter": ","}, [1797, 65]),
],
)
def test_load_gzip_compressed_csv_data(filename, kwargs, expected_shape):
actual_data = load_gzip_compressed_csv_data(filename, **kwargs)
assert actual_data.shape == tuple(expected_shape)
def test_load_gzip_compressed_csv_data_with_descr():
data_file_name = "diabetes_target.csv.gz"
descr_file_name = "diabetes.rst"
expected_data = load_gzip_compressed_csv_data(data_file_name=data_file_name)
actual_data, descr = load_gzip_compressed_csv_data(
data_file_name=data_file_name,
descr_file_name=descr_file_name,
)
np.testing.assert_array_equal(actual_data, expected_data)
assert descr.startswith(".. _diabetes_dataset:")
def test_load_sample_images():
try:
res = load_sample_images()
assert len(res.images) == 2
assert len(res.filenames) == 2
images = res.images
# assert is china image
assert np.all(images[0][0, 0, :] == np.array([174, 201, 231], dtype=np.uint8))
# assert is flower image
assert np.all(images[1][0, 0, :] == np.array([2, 19, 13], dtype=np.uint8))
assert res.DESCR
except ImportError:
warnings.warn("Could not load sample images, PIL is not available.")
def test_load_sample_image():
try:
china = load_sample_image("china.jpg")
assert china.dtype == "uint8"
assert china.shape == (427, 640, 3)
except ImportError:
warnings.warn("Could not load sample images, PIL is not available.")
def test_load_diabetes_raw():
"""Test to check that we load a scaled version by default but that we can
get an unscaled version when setting `scaled=False`."""
diabetes_raw = load_diabetes(scaled=False)
assert diabetes_raw.data.shape == (442, 10)
assert diabetes_raw.target.size, 442
assert len(diabetes_raw.feature_names) == 10
assert diabetes_raw.DESCR
diabetes_default = load_diabetes()
np.testing.assert_allclose(
scale(diabetes_raw.data) / (442**0.5), diabetes_default.data, atol=1e-04
)
@pytest.mark.parametrize(
"loader_func, data_shape, target_shape, n_target, has_descr, filenames",
[
(load_breast_cancer, (569, 30), (569,), 2, True, ["filename"]),
(load_wine, (178, 13), (178,), 3, True, []),
(load_iris, (150, 4), (150,), 3, True, ["filename"]),
(
load_linnerud,
(20, 3),
(20, 3),
3,
True,
["data_filename", "target_filename"],
),
(load_diabetes, (442, 10), (442,), None, True, []),
(load_digits, (1797, 64), (1797,), 10, True, []),
(partial(load_digits, n_class=9), (1617, 64), (1617,), 10, True, []),
],
)
def test_loader(loader_func, data_shape, target_shape, n_target, has_descr, filenames):
bunch = loader_func()
assert isinstance(bunch, Bunch)
assert bunch.data.shape == data_shape
assert bunch.target.shape == target_shape
if hasattr(bunch, "feature_names"):
assert len(bunch.feature_names) == data_shape[1]
if n_target is not None:
assert len(bunch.target_names) == n_target
if has_descr:
assert bunch.DESCR
if filenames:
assert "data_module" in bunch
assert all(
[
f in bunch
and (resources.files(bunch["data_module"]) / bunch[f]).is_file()
for f in filenames
]
)
@pytest.mark.parametrize(
"loader_func, data_dtype, target_dtype",
[
(load_breast_cancer, np.float64, int),
(load_diabetes, np.float64, np.float64),
(load_digits, np.float64, int),
(load_iris, np.float64, int),
(load_linnerud, np.float64, np.float64),
(load_wine, np.float64, int),
],
)
def test_toy_dataset_frame_dtype(loader_func, data_dtype, target_dtype):
default_result = loader_func()
check_as_frame(
default_result,
loader_func,
expected_data_dtype=data_dtype,
expected_target_dtype=target_dtype,
)
def test_loads_dumps_bunch():
bunch = Bunch(x="x")
bunch_from_pkl = loads(dumps(bunch))
bunch_from_pkl.x = "y"
assert bunch_from_pkl["x"] == bunch_from_pkl.x
def test_bunch_pickle_generated_with_0_16_and_read_with_0_17():
bunch = Bunch(key="original")
# This reproduces a problem when Bunch pickles have been created
# with scikit-learn 0.16 and are read with 0.17. Basically there
# is a surprising behaviour because reading bunch.key uses
# bunch.__dict__ (which is non empty for 0.16 Bunch objects)
# whereas assigning into bunch.key uses bunch.__setattr__. See
# https://github.com/scikit-learn/scikit-learn/issues/6196 for
# more details
bunch.__dict__["key"] = "set from __dict__"
bunch_from_pkl = loads(dumps(bunch))
# After loading from pickle the __dict__ should have been ignored
assert bunch_from_pkl.key == "original"
assert bunch_from_pkl["key"] == "original"
# Making sure that changing the attr does change the value
# associated with __getitem__ as well
bunch_from_pkl.key = "changed"
assert bunch_from_pkl.key == "changed"
assert bunch_from_pkl["key"] == "changed"
def test_bunch_dir():
# check that dir (important for autocomplete) shows attributes
data = load_iris()
assert "data" in dir(data)
def test_load_boston_error():
"""Check that we raise the ethical warning when trying to import `load_boston`."""
msg = "The Boston housing prices dataset has an ethical problem"
with pytest.raises(ImportError, match=msg):
from sklearn.datasets import load_boston # noqa
# other non-existing function should raise the usual import error
msg = "cannot import name 'non_existing_function' from 'sklearn.datasets'"
with pytest.raises(ImportError, match=msg):
from sklearn.datasets import non_existing_function # noqa
|