1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017
|
/* Copyright 2004,2007 ENSEIRB, INRIA & CNRS
**
** This file is part of the Scotch software package for static mapping,
** graph partitioning and sparse matrix ordering.
**
** This software is governed by the CeCILL-C license under French law
** and abiding by the rules of distribution of free software. You can
** use, modify and/or redistribute the software under the terms of the
** CeCILL-C license as circulated by CEA, CNRS and INRIA at the following
** URL: "http://www.cecill.info".
**
** As a counterpart to the access to the source code and rights to copy,
** modify and redistribute granted by the license, users are provided
** only with a limited warranty and the software's author, the holder of
** the economic rights, and the successive licensors have only limited
** liability.
**
** In this respect, the user's attention is drawn to the risks associated
** with loading, using, modifying and/or developing or reproducing the
** software by the user in light of its specific status of free software,
** that may mean that it is complicated to manipulate, and that also
** therefore means that it is reserved for developers and experienced
** professionals having in-depth computer knowledge. Users are therefore
** encouraged to load and test the software's suitability as regards
** their requirements in conditions enabling the security of their
** systems and/or data to be ensured and, more generally, to use and
** operate it in the same conditions as regards security.
**
** The fact that you are presently reading this means that you have had
** knowledge of the CeCILL-C license and that you accept its terms.
*/
/************************************************************/
/** **/
/** NAME : hall_order_hf.c **/
/** **/
/** AUTHOR : Patrick AMESTOY **/
/** Francois PELLEGRINI **/
/** **/
/** FUNCTION : This module orders a halo graph or mesh **/
/** structure using the block-oriented Halo **/
/** Approximate (Multiple) Minimum Fill **/
/** algorithm, with super-variable **/
/** accounting R2HAMDf4 (v2.0). **/
/** **/
/** DATES : # Version 3.4 : from : 15 may 2001 **/
/** to : 23 nov 2001 **/
/** # Version 4.0 : from : 10 jan 2003 **/
/** to : 02 apr 2004 **/
/** **/
/** NOTES : # This module contains pieces of code **/
/** that belong to other people; see **/
/** below. **/
/** **/
/************************************************************/
/*
** The defines and includes.
*/
#define HALL_ORDER_HF
#include "module.h"
#include "common.h"
#include "graph.h"
#include "hall_order_hf.h"
/* -- translated by f2c (version 19970219). */
/** -------------------------------------------------------------------- **/
/** December 8th 2003 **/
/** Unique version for both graph of variables and graphs of elements **/
/** Let us refer to as **/
/** Gv a graph with only variables **/
/** Ge a graph with both variables and elements **/
/** **/
/** Notations used: **/
/** **/
/** Let V be the set of nodes **/
/** V = Ve + V0 + V1 **/
/** V0 = Set of variable nodes (not in halo) **/
/** V1 = Set of variable nodes (in halo) **/
/** Ve = Set of element nodes **/
/** **/
/** All 3 sets are disjoint, Ve and V1 can be empty **/
/** **/
/** Modifications w.r.t. previous version : **/
/** **/
/** New Input: **/
/** --------- **/
/** nbelts : integer holding size of Ve **/
/** =0 if Gv (graph of variables) **/
/** >0 if Ge **/
/** **/
/** Extension of the meaning of input entry len for nodes in Ve **/
/** --------- **/
/** len(i) = | Adj(i) | if i \in V0 U Ve **/
/** ( Note that in the case of a GE graph **/
/** if v\in V0 then len(v) = nb of elements adjacent to v ) **/
/** len(i) = - | Adj(i) | if i \in V1 **/
/** or -N -1 if | Adj(i) | = 0 and i \in V1 **/
/** **/
/** Modified the meaning of input entry elen **/
/** --------- **/
/** if e \in Ve then elen (e) = -N-1 **/
/** if v \in V0 then elen (v) = External degree of v **/
/** Gv : elen (v) = len(v) **/
/** Ge : elen (v) **/
/** should be computed in SCOTCH **/
/** if v \in V1 then elen (v) = 0 **/
/** **/
/** **/
/** Output is unchanged **/
/** --------- **/
/** **/
/** **/
/** End remarks done on December 8th 2003 **/
/** ---------------------------------------------------------------------**/
/** **/
/** **/
/** AMF4 (version used on newton for uns tests) **/
/** given to Francois on Nov 31 2000 **/
/** Approximation of level4 of the minimum fill heuristic **/
/** (best approx of Min fill currently available based on collaborative **/
/** work between P. Amestoy, T. Davis and I. Duff) **/
/** **/
/** Remarks: **/
/** ------- **/
/** 1/ !!!!!!!! WARNING !!!!!!!!!! **/
/** TWO additionnal parameters w.r.t HALOAMD **/
/** -------------------------- **/
/** NBBUCK : integer greater than 1 (advised value is 2*N) **/
/** HEAD : HEAD(0:NBBUCK+1) integer array of size NBBUCK+2 **/
/** NOTE that it start at index 0 !! **/
/** **/
/** 2/ Interface for MA41 or SCOTCH **/
/** **/
/** 3/ Nodes of V1 are amalgamated in one root supervariable **/
/** the complete tree (of V0+V1) is correct in the sense of **/
/** MC47B output interface (NV for V1 nodes is ok). **/
/** Output data (PE,NV) can then be exploited by MA41LD. **/
/** Variable in V1 cannot be characterized on output. **/
/** -------------------------------------------------------------------- **/
void
hallOrderHfR2hamdf4 (
Gnum n, /* Matrix order */
Gnum nbelts, /* Number of elements */
Gnum nbbuck, /* Number of buckets */
Gnum iwlen, /* Length of array iw */
Gnum * restrict pe /* [] */, /* Array of indexes in iw of start of row i */
Gnum pfree, /* Useful size in iw */
Gnum * restrict len /* [] */, /* Array of lengths of adjacency lists */
Gnum * restrict iw /* [] */, /* Adjacency list array */
Gnum * restrict nv /* [] */, /* Array of element degrees */
Gnum * restrict elen /* [] */, /* Array that holds the inverse permutation */
Gnum * restrict last /* [] */, /* Array that holds the permutation */
Gnum * restrict ncmpa, /* Number of times array iw was compressed */
Gnum * restrict degree /* [] */, /* Array that holds degree data */
Gnum * restrict wf /* [] */, /* Flag array */
Gnum * restrict next /* [] */, /* Linked list structure */
Gnum * restrict w /* [] */, /* Flag array */
Gnum * restrict head /* [] */) /* Linked list structure */
{
Gnum hash, pend, hmod, lenj, dmax, wflg, dext, psrc, pdst,
wnvi, e, i, j, k, p, degme, x, nelme, nreal, lastd, nleft,
ilast, jlast, inext, jnext, n2, p1, nvpiv, p2, p3, me, nbflag, ln,
we, pj, pn, mindeg, elenme, slenme, maxmem, newmem, wf3, wf4,
deg, eln, mem, nel, pme, pas, nvi, nvj, pme1, pme2, knt1, knt2, knt3;
float rmf, rmf1;
/** Min fill approximation one extra array of size NBBUCK+2 is needed **/
/** INTEGER HEAD(0:NBBUCK+1) **/
/** -------------------------------------------------------------------- **/
/** HALOAMD_V6: (January 1999, P. Amestoy) **/
/** *********** **/
/** 1/ ERROR 2 detection followed by stop statement suppressed. **/
/** 2/ Pb 1 identified in V5 was not correctly solved. **/
/** **/
/** HALOAMD_V5: (December 1998, P. Amestoy) **/
/** *********** **/
/** 1/ Solved problem with matrix psmigr 1, because upper bound degree **/
/** DEG>N was considered as a node of V1. **/
/** **/
/** HALOAMD_V4: (October 1998, P. Amestoy) **/
/** *********** **/
/** Only MA41 interface (ok for both scotch and MA41) is included in **/
/** this file. **/
/** **/
/** HALOAMD_V3: (August 1998, P. Amestoy) **/
/** ********** **/
/** Solved problem in version 2: variables of V1 with len(i)=0 were not **/
/** well processed. See modification of the input to characterize those **/
/** variables. **/
/** Problem detected by Jacko Koster while experimenting with C version **/
/** 2 of haloAMD in the context of multiple front method based on **/
/** MA27: "if for an interface variable i, row i in the matrix has only **/
/** a nonzero entry on the diagonal, we first remove this entry and **/
/** len(i) is set to zero on input to HALOAMD. However, this means that **/
/** HALOAMD will treat variable i as an interior variable (in V0) **/
/** instead as an interface variable (in V1). It is indeed a bit **/
/** strange to have such interface variables but we encountered some **/
/** in our debugging experiments with some random partitionings. **/
/** Solution: **/
/** IF on input i \in V1 and len(i)=0 (that is adjlist(i)={}) THEN **/
/** len(i) must be set on input to -N-1. **/
/** ENDIF **/
/** Therefore, all variables i / len(i) < 0 and only those are in V1. **/
/** Variables with len(i) = -N-1 are then processed differently at the **/
/** beginning of the code. **/
/** **/
/** HALOAMD_V2: (April 1998) **/
/** ********** **/
/** The end of the tree (including links to block of flagged indices **/
/** is built) . The list of flagged indices is considered as a dense **/
/** amalgamated node. **/
/** Tested on rosanna: ~amestoy/MA41_NEW/SUN_RISC_dbl/SOFT **/
/** **/
/** Comments on the OUTPUT: **/
/** ---------------------- **/
/** **/
/** Let V= V0 U V1 the nodes of the initial graph (|V|=n). **/
/** The assembly tree corresponds to the tree of the supernodes (or **/
/** supervariables). Each node of the assembly tree is then composed of **/
/** one principal variable and a list of secondary variables. The list **/
/** of variable of a node (principal + secondary variables) then **/
/** describes the structure of the diagonal bloc of the supernode. **/
/** The elimination tree denotes the tree of all the variables(=nodes) **/
/** and is therefore of order n. The arrays NV(N) and PE(N) give a **/
/** description of the assembly tree. **/
/** **/
/** 1/ Description of array nv(N) (on OUPUT) **/
/** nv(i)=0 i is a secondary variable. **/
/** N+1> nv(i) >0 i is a principal variable, nv(i) holds the number **/
/** of elements in column i of L (true degree of i) **/
/** nv(i) = N+1 then i is a flagged variable (belonging to V1) **/
/** **/
/** 2/ Description of array PE(N) (on OUPUT) **/
/** pe(i) = -(father of variable/node i) in the elimination tree. **/
/** If nv (i) .gt. 0, then i represents a node in the assembly tree, **/
/** and the parent of i is -pe (i), or zero if i is a root. **/
/** If nv (i) = 0, then (i,-pe (i)) represents an edge in a **/
/** subtree, the root of which is a node in the assembly tree. **/
/** **/
/** 3/ Example: **/
/** Let If be a root node father of Is in the assembly tree. **/
/** If is the principal variable of the node If and let If1, If2, If3 **/
/** be the secondary variables of node If. Is is the principal **/
/** variable of the node Is and let Is1, Is2 be the secondary **/
/** variables of node Is. **/
/** Then: **/
/** NV(If1)=NV(If2)=NV(If3) = 0 (secondary variables) **/
/** NV(Is1)=NV(Is2) = 0 (secondary variables) **/
/** NV(If) > 0 (principal variable) **/
/** NV(Is) > 0 (principal variable) **/
/** PE(If) = 0 (root node) **/
/** PE(Is) = -If (If is the father of Is in the assembly tree) **/
/** PE(If1)=PE(If2)=PE(If3)= -If (If is the principal variable) **/
/** PE(Is1)=PE(Is2)= -Is (Is is the principal variable) **/
/** **/
/** HALOAMD_V1: (September 1997) **/
/** ********** **/
/** Initial version designed to experiment the numerical (fill-in) **/
/** impact of taking into account the halo. This code should be able to **/
/** experiment no-halo, partial halo, complete halo. **/
/** -------------------------------------------------------------------- **/
/** HALOAMD is designed to process a graph composed of two types **/
/** of nodes, V0 and V1, extracted from a larger gragh. **/
/** V0^V1 = {}, **/
/** We used Min. degree heuristic to order only **/
/** nodes in V0, but the adjacency to nodes **/
/** in V1 is taken into account during ordering. **/
/** Nodes in V1 are odered at last. **/
/** Adjacency between nodes of V1 need not be provided, **/
/** however |len(i)| must always corresponds to the number of **/
/** edges effectively provided in the adjacency list of i. **/
/** On input : **/
/** ******** **/
/** Nodes INODE in V1 are flagged with len(INODE) = -degree **/
/** Update version HALO V3 (August 1998): **/
/** if len(i)=0 and i \in V1 then len(i) must be set **/
/** on input to -N-1. **/
/** ERROR return : **/
/** ************ **/
/** Negative value in ncmpa indicates an error detected **/
/** by HALOAMD. **/
/** **/
/** The graph provided MUST follow the rule: **/
/** if (i,j) is an edge in the gragh then **/
/** j must be in the adjacency list of i AND **/
/** i must be in the adjacency list of j. **/
/** **/
/** REMARKS : **/
/** ------- **/
/** 1/ Providing edges between nodes of V1 should not **/
/** affect the final ordering, only the amount of edges **/
/** of the halo should effectively affect the solution. **/
/** This code should work in the following cases: **/
/** 1/ halo not provided **/
/** 2/ halo partially provided **/
/** 3/ complete halo **/
/** 4/ complete halo+interconnection between nodes of V1. **/
/** **/
/** 1/ should run and provide identical results (w.r.t to **/
/** current implementation of AMD in SCOTCH). **/
/** 3/ and 4/ should provide identical results. **/
/** **/
/** 2/ All modifications of the MC47 initial code are indicated **/
/** with begin HALO .. end HALO **/
/** **/
/** Ordering of nodes in V0 is based on Approximate Minimum Degree **/
/** ordering algorithm, with aggressive absorption: **/
/** Given a representation of the nonzero pattern of a symmetric matrix, **/
/** A, (excluding the diagonal) perform an approximate minimum **/
/** (UMFPACK/MA38-style) degree ordering to compute a pivot order **/
/** such that fill-in in the Cholesky **/
/** factors A = LL^T is kept low. At each step, the pivot **/
/** selected is the one with the minimum UMFPACK/MA38-style **/
/** upper-bound on the external degree. Aggresive absorption is **/
/** used to tighten the bound on the degree. This can result an **/
/** significant improvement in the quality of the ordering for **/
/** some matrices. **/
/** The approximate degree algorithm implemented here is the **/
/** symmetric analogue of the degree update algorithm in MA38, by **/
/** Davis and Duff, also in the Harwell Subroutine Library. **/
/** **/
/** **** CAUTION: ARGUMENTS ARE NOT CHECKED FOR ERRORS ON INPUT. ***** **/
/** ** If you want error checking, a more versatile input format, and ** **/
/** ** a simpler user interface, then use MC47A/AD in the Harwell ** **/
/** ** Subroutine Library, which checks for errors, transforms the ** **/
/** ** input, and calls MC47B/BD. ** **/
/** ******************************************************************** **/
/** References: (UF Tech Reports are available via anonymous ftp **/
/** to ftp.cis.ufl.edu:cis/tech-reports). **/
/** [1] Timothy A. Davis and Iain Duff, "An unsymmetric-pattern **/
/** multifrontal method for sparse LU factorization", **/
/** SIAM J. Matrix Analysis and Applications, to appear. **/
/** also Univ. of Florida Technical Report TR-94-038. **/
/** Discuss UMFPACK / MA38. **/
/** [2] Patrick Amestoy, Timothy A. Davis, and Iain S. Duff, **/
/** "An approximate minimum degree ordering algorithm," **/
/** SIAM J. Matrix Analysis and Applications (to appear), **/
/** also Univ. of Florida Technical Report TR-94-039. **/
/** Discusses this routine. **/
/** [3] Alan George and Joseph Liu, "The evolution of the **/
/** minimum degree ordering algorithm," SIAM Review, vol. **/
/** 31, no. 1, pp. 1-19, March 1989. We list below the **/
/** features mentioned in that paper that this code **/
/** includes: **/
/** mass elimination: **/
/** Yes. MA27 relied on supervariable detection for mass **/
/** elimination. **/
/** indistinguishable nodes: **/
/** Yes (we call these "supervariables"). This was also **/
/** in the MA27 code - although we modified the method of **/
/** detecting them (the previous hash was the true degree, **/
/** which we no longer keep track of). A supervariable is **/
/** a set of rows with identical nonzero pattern. All **/
/** variables in a supervariable are eliminated together. **/
/** Each supervariable has as its numerical name that of **/
/** one of its variables (its principal variable). **/
/** quotient graph representation: **/
/** Yes. We use the term "element" for the cliques formed **/
/** during elimination. This was also in the MA27 code. **/
/** The algorithm can operate in place, but it will work **/
/** more efficiently if given some "elbow room." **/
/** element absorption: **/
/** Yes. This was also in the MA27 code. **/
/** external degree: **/
/** Yes. The MA27 code was based on the true degree. **/
/** incomplete degree update and multiple elimination: **/
/** No. This was not in MA27, either. Our method of **/
/** degree update within MC47B/BD is element-based, not **/
/** variable-based. It is thus not well-suited for use **/
/** with incomplete degree update or multiple elimination. **/
/** -------------------------------------------------------------------- **/
/** Authors, and Copyright (C) 1995 by: **/
/** Timothy A. Davis, Patrick Amestoy, Iain S. Duff, & **/
/** John K. Reid. **/
/** Modified (V1) by P.R. Amestoy ENSEEIHT (1997) **/
/** Modified (V2) by P.R. Amestoy ENSEEIHT (1998) **/
/** Modified (V3) by P.R. Amestoy ENSEEIHT (1998) **/
/** Modified (V4) by P.R. Amestoy ENSEEIHT (1998) **/
/** Modified (V5) by P.R. Amestoy ENSEEIHT (1998) **/
/** Modified (V6) by P.R. Amestoy ENSEEIHT (1999) **/
/** **/
/** Dates: September, 1995 **/
/** September, 1997 (halo AMD V1) **/
/** April, 1998 (halo AMD V2) **/
/** August, 1998 (halo AMD V3) **/
-- w; /* Parameter adjustments */
-- next;
-- wf;
-- degree;
-- last;
-- elen;
-- nv;
-- len;
-- pe;
-- iw;
/* -- head; Array head not updated since starts from 0 */
n2 = - (nbbuck + 1);
/* pas = n / 8; [Update F.P. 20020715 selon hamf_20020220] Distance betweeen elements of the N, ..., NBBUCK entries of HEAD */
pas = MAX ((n / 8), 1); /* Distance betweeen elements of the N, ..., NBBUCK entries of HEAD */
wflg = 2;
*ncmpa = 0;
nel = 0;
hmod = MAX (1, nbbuck - 1);
dmax = 0;
mem = pfree - 1;
maxmem = mem;
mindeg = 0;
rmf = (float) (n) * (float) (n - 1); /* Average sparsity of matrix; diagonal entry is not in mem */
nbflag = 0;
lastd = 0;
memSet (head, 0, (nbbuck + 2) * sizeof (Gnum));
memSet (last + 1, 0, n * sizeof (Gnum));
if (nbelts == 0) { /* Patch 8/12/03 <PA> */
memSet (elen + 1, 0, n * sizeof (Gnum));
for (i = 1; i <= n; i ++) {
nv[i] = 1;
w[i] = 1;
if (len[i] < 0) {
degree[i] = n2;
nbflag ++;
if (len[i] == - (n + 1)) { /* Patch 09/08/98 <PA+FP> */
len[i] = 0;
pe[i] = 0; /* Patch 12/12/03 <PA>: Because of compress, we force skipping those entries (which are anyway empty) */
}
else
len[i] = - len[i];
}
else
degree[i] = len[i];
}
}
else { /* Patch 08/12/03 <PA>: Duplicate part of previous loop to avoid sytematic testing for elements */
for (i = 1; i <= n; i ++) {
nv[i] = 1;
w[i] = 1;
if (len[i] < 0) { /* i \in V1 */
degree[i] = n2;
nbflag ++;
if (len[i] == - (n + 1)) { /* Patch 09/08/98 <PA+FP> */
len[i] = 0;
pe[i] = 0; /* Patch 12/12/03 <PA>: because of compress, we force skipping those entries (which are anyway empty) */
elen[i] = 0; /* Patch 16/12/03 <PA> */
}
else {
len[i] = - len[i];
elen[i] = len[i]; /* Patch 16/12/03 <PA>: only elements are adjacent to a variable */
}
}
else { /* i \in Ve or V0 */
if (elen[i] < 0) { /* i \in Ve */
nel ++;
degree[i] = len[i];
elen[i] = - nel;
dmax = MAX (dmax, degree[i]); /* Patch 11/03/04 <PA> */
}
else {
degree[i] = elen[i];
elen[i] = len[i]; /* Patch 16/12/03 <PA>: only elements are adjacent to a variable */
}
}
}
}
/* Temporary Patch 8/12/03 <PA> TODO REMOVE */
if (nbelts != nel)
printf ("error 8Dec2003\n");
nreal = n - nbflag;
for (i = 1; i <= n; i ++) {
if (elen[i] < 0 ) /* Patch 16/12/03 <PA>: Skip elements */
continue;
deg = degree[i];
if (deg == n2) {
deg = nbbuck + 1;
if (lastd == 0) {
lastd = i;
head[deg] = i;
next[i] = 0;
last[i] = 0;
}
else {
next[lastd] = i;
last[i] = lastd;
lastd = i;
next[i] = 0;
}
}
else if (deg > 0) {
if (nbelts != 0) { /* Patch 04/01/04 <FP+PA> */
Gnum l; /* Size of largest adjacent element */
Gnum m; /* Current edge being visited */
for (m = pe[i], l = 0; m < pe[i] + elen[i]; m ++) {
Gnum o; /* Current element being visited */
o = iw[m];
if (len[o] > l)
l = len[o];
}
deg = (Gnum) ((float) deg * (float) (deg - 1) - (float) l * (float) (l - 1)) / 2;
if (deg < 0) /* Patch 04/01/04 <FP> */
deg = 0;
}
wf[i] = deg; /* Patch 14/01/04 <PA> */
if (deg > n)
deg = MIN ((deg - n) / pas + n, nbbuck);
inext = head[deg];
if (inext != 0)
last[inext] = i;
next[i] = inext;
head[deg] = i;
}
else {
nel ++;
elen[i] = - nel;
pe[i] = 0;
w[i] = 0;
}
} /* L20: */
nleft = n - nel; /* Patch v5 12/12/98 <PA+FP> */
while (nel < nreal) { /* WHILE (selecting pivots) DO */
for (deg = mindeg; deg <= nbbuck; deg ++) {
me = head[deg];
if (me > 0)
break; /* GO to 50 */
} /* L40: */
mindeg = deg;
if (me <= 0) { /* Error 1 */
*ncmpa = -n;
return;
}
if (deg > n) {
j = next[me];
k = wf[me];
while (j > 0) {
if (wf[j] < k) {
me = j;
k = wf[me];
}
j = next[j];
}
ilast = last[me];
inext = next[me];
if (inext != 0)
last[inext] = ilast;
if (ilast != 0)
next[ilast] = inext;
else
head[deg] = inext; /* me is at the head of the degree list */
}
else {
inext = next[me];
if (inext != 0)
last[inext] = 0;
head[deg] = inext;
}
elenme = elen[me];
elen[me] = - (nel + 1);
nvpiv = nv[me];
nel += nvpiv;
nv[me] = - nvpiv;
degme = 0;
if (elenme == 0) {
pme1 = pe[me];
pme2 = pme1 - 1;
for (p = pme1; p <= pme1 + len[me] - 1; p ++) {
i = iw[p];
nvi = nv[i];
if (nvi > 0) {
degme += nvi;
nv[i] = - nvi;
pme2 ++;
iw[pme2] = i;
if (degree[i] != n2) {
ilast = last[i];
inext = next[i];
if (inext != 0)
last[inext] = ilast;
if (ilast != 0)
next[ilast] = inext;
else {
if (wf[i] > n)
deg = MIN ((wf[i] - n) / pas + n, nbbuck);
else
deg = wf[i];
head[deg] = inext;
}
}
}
} /* L60: */
newmem = 0;
}
else {
p = pe[me];
pme1 = pfree;
slenme = len[me] - elenme;
for (knt1 = 1; knt1 <= elenme + 1; knt1 ++) {
if (knt1 > elenme) {
e = me;
pj = p;
ln = slenme;
}
else {
e = iw[p ++];
pj = pe[e];
ln = len[e];
}
for (knt2 = 1; knt2 <= ln; knt2 ++) {
i = iw[pj ++];
nvi = nv[i];
if (nvi > 0) {
if (pfree > iwlen) {
pe[me] = p;
len[me] -= knt1;
if (len[me] == 0)
pe[me] = 0;
pe[e] = pj;
len[e] = ln - knt2;
if (len[e] == 0)
pe[e] = 0;
(*ncmpa) ++;
for (j = 1; j <= n; j ++) {
pn = pe[j];
if (pn > 0) {
pe[j] = iw[pn];
iw[pn] = - j;
}
} /* L70: */
pdst = 1;
psrc = 1;
pend = pme1 - 1;
while (psrc <= pend) { /* L80: */
j = - iw[psrc ++];
if (j > 0) {
iw[pdst] = pe[j];
pe[j] = pdst ++;
lenj = len[j];
for (knt3 = 0; knt3 <= lenj - 2; knt3 ++)
iw[pdst + knt3] = iw[psrc + knt3];
pdst = pdst + (lenj - 1);
psrc = psrc + (lenj - 1);
}
}
p1 = pdst;
for (psrc = pme1; psrc <= pfree - 1; psrc ++, pdst ++) /* L100: */
iw[pdst] = iw[psrc];
pme1 = p1;
pfree = pdst;
pj = pe[e];
p = pe[me];
}
degme += nvi;
nv[i] = - nvi;
iw[pfree] = i;
(pfree) ++;
if (degree[i] != n2) {
ilast = last[i];
inext = next[i];
if (inext != 0)
last[inext] = ilast;
if (ilast != 0)
next[ilast] = inext;
else {
if (wf[i] > n)
deg = MIN ((wf[i] - n) / pas + n, nbbuck);
else
deg = wf[i];
head[deg] = inext;
}
}
}
} /* L110: */
if (e != me) {
pe[e] = -me;
w[e] = 0;
}
} /* L120: */
pme2 = pfree - 1;
newmem = pfree - pme1;
mem += newmem;
maxmem = MAX (maxmem, mem);
}
degree[me] = degme;
pe[me] = pme1;
len[me] = pme2 - pme1 + 1;
if (wflg + n <= wflg) {
for (x = 1; x <= n; x ++) {
if (w[x] != 0)
w[x] = 1;
} /* L130: */
wflg = 2;
}
for (pme = pme1; pme <= pme2; pme ++) {
i = iw[pme];
eln = elen[i];
if (eln > 0) {
nvi = - nv[i];
wnvi = wflg - nvi;
for (p = pe[i]; p < pe[i] + eln; p ++) {
e = iw[p];
we = w[e];
if (we >= wflg)
we -= nvi;
else if (we != 0) {
we = degree[e] + wnvi;
wf[e] = 0;
}
w[e] = we;
} /* L140: */
}
} /* L150: */
for (pme = pme1; pme <= pme2; pme ++) {
i = iw[pme];
p1 = pe[i];
p2 = p1 + elen[i] - 1;
pn = p1;
hash = 0;
deg = 0;
wf3 = 0;
wf4 = 0;
nvi = - nv[i];
for (p = p1; p <= p2; p ++) {
e = iw[p];
dext = w[e] - wflg;
if (dext > 0) {
if (wf[e] == 0)
wf[e] = dext * ((2 * degree[e]) - dext - 1);
wf4 += wf[e];
deg += dext;
iw[pn ++] = e;
hash += e;
}
else if (dext == 0) {
pe[e] = -me;
w[e] = 0;
}
} /* L160: */
elen[i] = pn - p1 + 1;
p3 = pn;
for (p = p2 + 1; p < p1 + len[i]; p ++) {
j = iw[p];
nvj = nv[j];
if (nvj > 0) {
deg += nvj;
wf3 += nvj;
iw[pn ++] = j;
hash += j;
}
} /* L170: */
if (degree[i] == n2)
deg = n2;
if (deg == 0) {
pe[i] = - me;
nvi = - nv[i];
degme -= nvi;
nvpiv += nvi;
nel += nvi;
nv[i] = 0;
elen[i] = 0;
}
else {
if (degree[i] != n2) {
if (degree[i] < deg) {
wf4 = 0;
wf3 = 0;
}
else
degree[i] = deg;
}
wf[i] = wf4 + 2 * nvi * wf3;
iw[pn] = iw[p3];
iw[p3] = iw[p1];
iw[p1] = me;
len[i] = pn - p1 + 1;
if (deg != n2) {
hash = (hash % hmod) + 1;
j = head[hash];
if (j <= 0) {
next[i] = - j;
head[hash] = - i;
}
else {
next[i] = last[j];
last[j] = i;
}
last[i] = hash;
}
}
} /* L180: */
degree[me] = degme;
dmax = MAX (dmax, degme);
wflg += dmax;
if (wflg + n <= wflg) {
for (x = 1; x <= n; x ++) {
if (w[x] != 0)
w[x] = 1;
}
wflg = 2;
}
for (pme = pme1; pme <= pme2; pme ++) {
i = iw[pme];
if ((nv[i] < 0) && (degree[i] != n2)) {
hash = last[i];
j = head[hash];
if (j == 0)
continue;
if (j < 0) {
i = - j;
head[hash] = 0;
}
else {
i = last[j];
last[j] = 0;
}
if (i == 0)
continue;
L200: /* WHILE LOOP: */
if (next[i] != 0) {
ln = len[i];
eln = elen[i];
for (p = pe[i] + 1; p < pe[i] + ln; p ++)
w[iw[p]] = wflg;
jlast = i;
j = next[i];
L220: /* WHILE LOOP: */
if (j != 0) {
if (len[j] != ln)
goto L240;
if (elen[j] != eln)
goto L240;
for (p = pe[j] + 1; p < pe[j] + ln; p ++) {
if (w[iw[p]] != wflg)
goto L240;
} /* L230: */
pe[j] = -i;
if (wf[j] > wf[i])
wf[i] = wf[j];
nv[i] += nv[j];
nv[j] = 0;
elen[j] = 0;
j = next[j];
next[jlast] = j;
goto L220;
L240:
jlast = j;
j = next[j];
goto L220;
}
wflg ++;
i = next[i];
if (i != 0)
goto L200;
}
}
}
p = pme1;
nleft = n - nel;
for (pme = pme1; pme <= pme2; pme ++) {
i = iw[pme];
nvi = - nv[i];
if (nvi > 0) {
nv[i] = nvi;
if (degree[i] != n2) {
deg = MIN (degree[i] + degme, nleft) - nvi;
if (degree[i] + degme > nleft) {
deg = degree[i];
rmf1 = (float) deg * (float) (deg - 1 + (2 * degme)) - (float) wf[i];
degree[i] = nleft - nvi;
deg = degree[i];
rmf = (float) deg * (float) (deg - 1) - (float) (degme - nvi) * (float) (degme - nvi - 1);
rmf = MIN (rmf, rmf1);
}
else {
deg = degree[i];
degree[i] = degree[i] + degme - nvi;
rmf = (float) deg * (float) (deg - 1 + (2 * degme)) - (float) wf[i];
}
wf[i] = (int) (rmf / (float) (nvi + 1) + 0.5);
wf[i] = MAX (0, wf[i]);
deg = wf[i];
if (deg > n)
deg = MIN ((deg - n) / pas + n, nbbuck);
inext = head[deg];
if (inext != 0)
last[inext] = i;
next[i] = inext;
last[i] = 0;
head[deg] = i;
mindeg = MIN (mindeg, deg);
}
iw[p ++] = i;
}
} /* L260: */
nv[me] = nvpiv + degme;
len[me] = p - pme1;
if (len[me] == 0) {
pe[me] = 0;
w[me] = 0;
}
if (newmem != 0) {
pfree = p;
mem = mem - newmem + len[me];
}
} /* END WHILE (selecting pivots) */
if (nel < n) { /* Patch 12/12/98 <PA+FP> (old: nreal < n) */
for (deg = mindeg; deg <= (nbbuck + 1); deg ++) {
me = head[deg];
if (me > 0)
break;
}
mindeg = deg;
nelme = - (nel + 1);
for (x = 1; x <= n; x ++) {
if ((pe[x] > 0) && (elen[x] < 0))
pe[x] = - me;
else if (degree[x] == n2) {
nel += nv[x];
pe[x] = - me;
elen[x] = 0;
nv[x] = 0; /* Patch 12/12/98 <PA+FP> (old: n + 1) */
}
}
elen[me] = nelme;
nv[me] = n - nreal; /* Patch 12/12/98 <PA+FP> (old: n + 1) */
pe[me] = 0;
if (nel != n) { /* Error 2 */
*ncmpa = - (n + 1);
return;
}
}
for (i = 1; i <= n; i ++) {
if (elen[i] == 0) {
j = - pe[i];
while (elen[j] >= 0) /* L270: */
j = - pe[j];
e = j;
k = - elen[e];
j = i;
while (elen[j] >= 0) { /* L280: */
jnext = - pe[j];
pe[j] = - e;
if (elen[j] == 0)
elen[j] = k ++;
j = jnext;
}
elen[e] = - k;
}
} /* L290: */
#ifdef DEAD_CODE
for (i = 1; i <= n; i ++) { /* Patch 19/10/98 <PA+FP> */
k = abs (elen[i]);
last[k] = i;
elen[i] = k;
} /* L300: */
#endif /* DEAD_CODE */
pfree = maxmem;
}
|