1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369
|
## SPDX-License-Identifier: BSD-2-Clause
##
## Copyright 2020-2025 Inria & Université de Bordeaux
##
## Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions
## are met:
##
## 1. Redistributions of source code must retain the above copyright
## notice, this list of conditions and the following disclaimer.
##
## 2. Redistributions in binary form must reproduce the above
## copyright notice, this list of conditions and the following
## disclaimer in the documentation and/or other materials provided
## with the distribution.
##
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
## CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES,
## INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
## MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
## DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS
## BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
## TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
## DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
## ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
## TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF
## THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
## SUCH DAMAGE.
##
import sys
import pytest
import scotchpy as SCOTCH
import numpy as np
import scotchpy.common as _common
try:
import scotchpy.dgraph as PTSCOTCH
except AttributeError:
pytest.skip('ptscotch not available', allow_module_level=True)
from scotchpy.common import _ptscotch_lib, _libptscotch_mpi4py_lib
import tempfile
import importlib.resources
import os
try:
from mpi4py import MPI
if _ptscotch_lib and _libptscotch_mpi4py_lib:
flag_mpi4py_available = True
else:
flag_mpi4py_available = False
except ImportError:
flag_mpi4py_available = False
_data_dir = importlib.resources.files('scotchpy').joinpath("data")
@pytest.mark.mpi
def testDgraphCheck():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
proclocnum = comm.Get_rank()
comm.Barrier()
graf = PTSCOTCH.DGraph(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
graf.load(fp)
else:
graf.load(None)
if graf.check():
print("Invalid graph")
sys.exit(1)
graf.exit()
comm.Barrier()
@pytest.mark.mpi
def testDgraphBand():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
procglbnbr = comm.Get_size()
proclocnum = comm.Get_rank()
comm.Barrier()
graf = PTSCOTCH.DGraph(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
graf.load(fp)
else:
graf.load(None)
comm.Barrier()
baseval, vertglbnbr, vertlocnbr, _, _, _, _, _, _, _, _, _, _, _, _ = graf.data()
fronloctab = np.full(vertlocnbr, -1, _common.proper_int)
bandgraf = PTSCOTCH.DGraph(comm)
fronloctab[0] = baseval
if proclocnum == 1:
fronlocnbr = 0
else:
fronlocnbr = 1
graf.band(fronlocnbr, fronloctab, 4, bandgraf)
fronloctab = None
(
baseval,
bandvertglbnbr,
bandvertlocnbr,
_,
_,
_,
_,
_,
bandvlblloctab,
_,
_,
_,
_,
_,
_,
) = bandgraf.data()
tmpdir = tempfile.TemporaryDirectory()
tmpfile = os.path.join(tmpdir.name, "test_scotch_dgraph_band_output.txt")
if proclocnum == 0:
try:
with open(tmpfile, "x") as file:
pass
except FileExistsError:
pass
comm.Barrier()
for procnum in range(procglbnbr):
comm.Barrier()
if procnum == proclocnum:
with open(tmpfile, "a+") as file:
if procnum == 0:
file.write(f"{bandvertglbnbr}\n")
for bandvertlocnum in range(bandvertlocnbr):
file.write(f"{bandvlblloctab[bandvertlocnum]}\t1\n")
graf.exit()
bandgraf.exit()
tmpdir.cleanup()
@pytest.mark.mpi
def testDgraphCoarsen():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
procglbnbr = comm.Get_size()
proclocnum = comm.Get_rank()
comm.Barrier()
graf = PTSCOTCH.DGraph(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
graf.load(fp)
else:
graf.load(None)
_, vertglbnbr, vertlocnbr, _, _, _, _, _, _, _, _, _, _, _, _ = graf.data()
coarrat = 0.8
for i in range(3):
if i == 0:
foldval = _common.COARSENNONE
foldstr = "Plain coarsening"
elif i == 1:
foldval = _common.COARSENFOLD
foldstr = "Folding"
else:
foldval = _common.COARSENFOLDDUP
foldstr = "Folding with duplication"
if proclocnum == 0:
print(foldstr)
coargraf = PTSCOTCH.DGraph(comm)
o, multloctab = graf.coarsen(0, coarrat, foldval, coargraf)
coarstr = ""
if o == 0:
coarstr = "coarse graph created"
if o == 2:
coarstr = "folded graph not created here"
if o == 3:
coarstr = "cannot create coarse graph"
_, coarvertglbnbr, coarvertlocnbr, _, _, _, _, _, _, _, _, _, _, _, _ = (
coargraf.data()
)
for procnum in range(procglbnbr):
comm.Barrier()
if procnum == proclocnum:
if coarvertlocnbr and vertglbnbr :
print(
f"{procnum}: {coarstr} ({vertlocnbr} / {coarvertlocnbr} / {float(coarvertglbnbr) / float(vertglbnbr)})"
)
coargraf.exit()
graf.exit()
comm.Barrier()
@pytest.mark.mpi
def testDgraphGrow():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
procglbnbr = comm.Get_size()
proclocnum = comm.Get_rank()
comm.Barrier()
graf = PTSCOTCH.DGraph(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
graf.load(fp)
else:
graf.load(None)
comm.Barrier()
graf.ghst()
baseval, vertglbnbr, vertlocnbr, _, vertgstnbr, _, _, _, _, _, _, _, _, _, _ = (
graf.data()
)
seedloctab = np.full(vertlocnbr, -1, _common.proper_int)
partgsttab = np.full(vertgstnbr, ~0, _common.proper_int)
_common.random_reset()
seedloctab[0] = baseval + _common.random_val(vertlocnbr)
seedloctab[1] = baseval + _common.random_val(vertlocnbr)
seedloctab[2] = baseval + _common.random_val(vertlocnbr)
partgsttab[seedloctab[0] - baseval] = 0
partgsttab[seedloctab[1] - baseval] = 1
partgsttab[seedloctab[2] - baseval] = 2
graf.grow(3, seedloctab, 4, partgsttab)
seedloctab = None
tmpdir = tempfile.TemporaryDirectory()
tmpfile = os.path.join(tmpdir.name, "test_scotchpy_dgraph_grow_output.txt")
if proclocnum == 0:
try:
with open(tmpfile, "x") as file:
pass
except FileExistsError:
pass
comm.Barrier()
statdat = MPI.Status()
for procnum in range(procglbnbr):
comm.Barrier()
if procnum == proclocnum:
with open(tmpfile, "a+") as file:
if procnum == 0:
file.write(f"{vertglbnbr}\n")
vertlocadj = baseval
else:
vertlocadj = comm.recv(source=procnum - 1, tag=0, status=statdat)
for vertlocnum in range(vertlocnbr):
file.write(f"{vertlocadj + vertlocnum}\t{partgsttab[vertlocnum]}\n")
if procnum < (procglbnbr - 1):
vertlocadj += vertlocnbr
comm.send(vertlocadj, dest=procnum + 1, tag=0)
graf.exit()
tmpdir.cleanup()
@pytest.mark.mpi
def testDgraphInduce():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
proclocnum = comm.Get_rank()
comm.Barrier()
orggraf = PTSCOTCH.DGraph(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
orggraf.load(fp)
else:
orggraf.load(None)
comm.Barrier()
baseval, _, orgvertlocnbr, _, _, _, _, _, _, _, _, _, _, _, _ = orggraf.data()
orgpartloctab = np.full(orgvertlocnbr, -1, dtype=int)
indlistloctab = np.full(orgvertlocnbr, -1, dtype=int)
_common.random_reset()
orgpartloctab = np.zeros(orgvertlocnbr, dtype=int)
indlistloctab = np.arange(baseval, baseval + orgvertlocnbr, dtype=int)
np.random.shuffle(indlistloctab)
indvertlocnbr = (orgvertlocnbr + 1) // 2
orgpartloctab[indlistloctab[:indvertlocnbr] - baseval] = 1
indgraf = PTSCOTCH.DGraph(comm)
indgraf.init(comm)
orggraf.induce_part(orgpartloctab, 1, indvertlocnbr, indgraf)
indgraf.check()
orggraf.exit()
indgraf.exit()
@pytest.mark.mpi
def testDgraphRedist():
if not flag_mpi4py_available:
pytest.xfail("MPI not found")
comm = MPI.COMM_WORLD
procglbnbr = comm.Get_size()
proclocnum = comm.Get_rank()
comm.Barrier()
srcgraf = PTSCOTCH.DGraph(comm)
dstgraf = PTSCOTCH.DGraph(comm)
dstgraf.init(comm)
if proclocnum == 0:
with open(os.path.join(_data_dir, "bump_b100000.grf")) as fp:
srcgraf.load(fp)
else:
srcgraf.load(None)
srcgraf.check()
comm.Barrier()
_, vertglbnbr, vertlocnbr, _, _, _, _, _, _, _, _, _, _, _, _ = srcgraf.data()
partloctab = np.zeros(vertlocnbr, dtype=int)
for vertlocnum in range(vertlocnbr):
partloctab[vertlocnum] = (vertlocnum // 3) % procglbnbr
srcgraf.redist(partloctab, None, -1, -1, dstgraf)
dstgraf.exit()
srcgraf.exit()
comm.Barrier()
|