File: parameters

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nsam=6
rep=20000
seqlen=10000001
rho=4000
mut=8000
replicate=20000

#toy trial...
#rep=100
#seqlen=1000001
#rho=400
#mut=800

top_dir="/well/bsg/joezhu/prune_test"


cmd="${nsam} 1 -T -t ${mut} -r ${rho} ${seqlen}"
rep=$(expr $SGE_TASK_ID )

#rep=10