1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575
|
"""Tests for seaborn utility functions."""
import re
import tempfile
from urllib.request import urlopen
from http.client import HTTPException
import numpy as np
import pandas as pd
import matplotlib as mpl
import matplotlib.pyplot as plt
from cycler import cycler
import pytest
from numpy.testing import (
assert_array_equal,
)
from pandas.testing import (
assert_series_equal,
assert_frame_equal,
)
from seaborn import utils, rcmod
from seaborn.external.version import Version
from seaborn.utils import (
get_dataset_names,
get_color_cycle,
remove_na,
load_dataset,
_assign_default_kwargs,
_draw_figure,
_deprecate_ci,
)
a_norm = np.random.randn(100)
def _network(t=None, url="https://github.com"):
"""
Decorator that will skip a test if `url` is unreachable.
Parameters
----------
t : function, optional
url : str, optional
"""
if t is None:
return lambda x: _network(x, url=url)
def wrapper(*args, **kwargs):
# attempt to connect
try:
f = urlopen(url)
except (OSError, HTTPException):
pytest.skip("No internet connection")
else:
f.close()
return t(*args, **kwargs)
return wrapper
def test_ci_to_errsize():
"""Test behavior of ci_to_errsize."""
cis = [[.5, .5],
[1.25, 1.5]]
heights = [1, 1.5]
actual_errsize = np.array([[.5, 1],
[.25, 0]])
test_errsize = utils.ci_to_errsize(cis, heights)
assert_array_equal(actual_errsize, test_errsize)
def test_desaturate():
"""Test color desaturation."""
out1 = utils.desaturate("red", .5)
assert out1 == (.75, .25, .25)
out2 = utils.desaturate("#00FF00", .5)
assert out2 == (.25, .75, .25)
out3 = utils.desaturate((0, 0, 1), .5)
assert out3 == (.25, .25, .75)
out4 = utils.desaturate("red", .5)
assert out4 == (.75, .25, .25)
def test_desaturation_prop():
"""Test that pct outside of [0, 1] raises exception."""
with pytest.raises(ValueError):
utils.desaturate("blue", 50)
def test_saturate():
"""Test performance of saturation function."""
out = utils.saturate((.75, .25, .25))
assert out == (1, 0, 0)
@pytest.mark.parametrize(
"s,exp",
[
("a", "a"),
("abc", "abc"),
(b"a", "a"),
(b"abc", "abc"),
(bytearray("abc", "utf-8"), "abc"),
(bytearray(), ""),
(1, "1"),
(0, "0"),
([], str([])),
],
)
def test_to_utf8(s, exp):
"""Test the to_utf8 function: object to string"""
u = utils.to_utf8(s)
assert type(u) == str
assert u == exp
class TestSpineUtils:
sides = ["left", "right", "bottom", "top"]
outer_sides = ["top", "right"]
inner_sides = ["left", "bottom"]
offset = 10
original_position = ("outward", 0)
offset_position = ("outward", offset)
def test_despine(self):
f, ax = plt.subplots()
for side in self.sides:
assert ax.spines[side].get_visible()
utils.despine()
for side in self.outer_sides:
assert ~ax.spines[side].get_visible()
for side in self.inner_sides:
assert ax.spines[side].get_visible()
utils.despine(**dict(zip(self.sides, [True] * 4)))
for side in self.sides:
assert ~ax.spines[side].get_visible()
def test_despine_specific_axes(self):
f, (ax1, ax2) = plt.subplots(2, 1)
utils.despine(ax=ax2)
for side in self.sides:
assert ax1.spines[side].get_visible()
for side in self.outer_sides:
assert ~ax2.spines[side].get_visible()
for side in self.inner_sides:
assert ax2.spines[side].get_visible()
def test_despine_with_offset(self):
f, ax = plt.subplots()
for side in self.sides:
pos = ax.spines[side].get_position()
assert pos == self.original_position
utils.despine(ax=ax, offset=self.offset)
for side in self.sides:
is_visible = ax.spines[side].get_visible()
new_position = ax.spines[side].get_position()
if is_visible:
assert new_position == self.offset_position
else:
assert new_position == self.original_position
def test_despine_side_specific_offset(self):
f, ax = plt.subplots()
utils.despine(ax=ax, offset=dict(left=self.offset))
for side in self.sides:
is_visible = ax.spines[side].get_visible()
new_position = ax.spines[side].get_position()
if is_visible and side == "left":
assert new_position == self.offset_position
else:
assert new_position == self.original_position
def test_despine_with_offset_specific_axes(self):
f, (ax1, ax2) = plt.subplots(2, 1)
utils.despine(offset=self.offset, ax=ax2)
for side in self.sides:
pos1 = ax1.spines[side].get_position()
pos2 = ax2.spines[side].get_position()
assert pos1 == self.original_position
if ax2.spines[side].get_visible():
assert pos2 == self.offset_position
else:
assert pos2 == self.original_position
def test_despine_trim_spines(self):
f, ax = plt.subplots()
ax.plot([1, 2, 3], [1, 2, 3])
ax.set_xlim(.75, 3.25)
utils.despine(trim=True)
for side in self.inner_sides:
bounds = ax.spines[side].get_bounds()
assert bounds == (1, 3)
def test_despine_trim_inverted(self):
f, ax = plt.subplots()
ax.plot([1, 2, 3], [1, 2, 3])
ax.set_ylim(.85, 3.15)
ax.invert_yaxis()
utils.despine(trim=True)
for side in self.inner_sides:
bounds = ax.spines[side].get_bounds()
assert bounds == (1, 3)
def test_despine_trim_noticks(self):
f, ax = plt.subplots()
ax.plot([1, 2, 3], [1, 2, 3])
ax.set_yticks([])
utils.despine(trim=True)
assert ax.get_yticks().size == 0
def test_despine_trim_categorical(self):
f, ax = plt.subplots()
ax.plot(["a", "b", "c"], [1, 2, 3])
utils.despine(trim=True)
bounds = ax.spines["left"].get_bounds()
assert bounds == (1, 3)
bounds = ax.spines["bottom"].get_bounds()
assert bounds == (0, 2)
def test_despine_moved_ticks(self):
f, ax = plt.subplots()
for t in ax.yaxis.majorTicks:
t.tick1line.set_visible(True)
utils.despine(ax=ax, left=True, right=False)
for t in ax.yaxis.majorTicks:
assert t.tick2line.get_visible()
plt.close(f)
f, ax = plt.subplots()
for t in ax.yaxis.majorTicks:
t.tick1line.set_visible(False)
utils.despine(ax=ax, left=True, right=False)
for t in ax.yaxis.majorTicks:
assert not t.tick2line.get_visible()
plt.close(f)
f, ax = plt.subplots()
for t in ax.xaxis.majorTicks:
t.tick1line.set_visible(True)
utils.despine(ax=ax, bottom=True, top=False)
for t in ax.xaxis.majorTicks:
assert t.tick2line.get_visible()
plt.close(f)
f, ax = plt.subplots()
for t in ax.xaxis.majorTicks:
t.tick1line.set_visible(False)
utils.despine(ax=ax, bottom=True, top=False)
for t in ax.xaxis.majorTicks:
assert not t.tick2line.get_visible()
plt.close(f)
def test_ticklabels_overlap():
rcmod.set()
f, ax = plt.subplots(figsize=(2, 2))
f.tight_layout() # This gets the Agg renderer working
assert not utils.axis_ticklabels_overlap(ax.get_xticklabels())
big_strings = "abcdefgh", "ijklmnop"
ax.set_xlim(-.5, 1.5)
ax.set_xticks([0, 1])
ax.set_xticklabels(big_strings)
assert utils.axis_ticklabels_overlap(ax.get_xticklabels())
x, y = utils.axes_ticklabels_overlap(ax)
assert x
assert not y
def test_locator_to_legend_entries():
locator = mpl.ticker.MaxNLocator(nbins=3)
limits = (0.09, 0.4)
levels, str_levels = utils.locator_to_legend_entries(
locator, limits, float
)
assert str_levels == ["0.15", "0.30"]
limits = (0.8, 0.9)
levels, str_levels = utils.locator_to_legend_entries(
locator, limits, float
)
assert str_levels == ["0.80", "0.84", "0.88"]
limits = (1, 6)
levels, str_levels = utils.locator_to_legend_entries(locator, limits, int)
assert str_levels == ["2", "4", "6"]
locator = mpl.ticker.LogLocator(numticks=5)
limits = (5, 1425)
levels, str_levels = utils.locator_to_legend_entries(locator, limits, int)
if Version(mpl.__version__) >= Version("3.1"):
assert str_levels == ['10', '100', '1000']
limits = (0.00003, 0.02)
_, str_levels = utils.locator_to_legend_entries(locator, limits, float)
for i, exp in enumerate([4, 3, 2]):
# Use regex as mpl switched to minus sign, not hyphen, in 3.6
assert re.match(f"1e.0{exp}", str_levels[i])
def test_move_legend_matplotlib_objects():
fig, ax = plt.subplots()
colors = "C2", "C5"
labels = "first label", "second label"
title = "the legend"
for color, label in zip(colors, labels):
ax.plot([0, 1], color=color, label=label)
ax.legend(loc="upper right", title=title)
utils._draw_figure(fig)
xfm = ax.transAxes.inverted().transform
# --- Test axes legend
old_pos = xfm(ax.legend_.legendPatch.get_extents())
new_fontsize = 14
utils.move_legend(ax, "lower left", title_fontsize=new_fontsize)
utils._draw_figure(fig)
new_pos = xfm(ax.legend_.legendPatch.get_extents())
assert (new_pos < old_pos).all()
assert ax.legend_.get_title().get_text() == title
assert ax.legend_.get_title().get_size() == new_fontsize
# --- Test title replacement
new_title = "new title"
utils.move_legend(ax, "lower left", title=new_title)
utils._draw_figure(fig)
assert ax.legend_.get_title().get_text() == new_title
# --- Test figure legend
fig.legend(loc="upper right", title=title)
_draw_figure(fig)
xfm = fig.transFigure.inverted().transform
old_pos = xfm(fig.legends[0].legendPatch.get_extents())
utils.move_legend(fig, "lower left", title=new_title)
_draw_figure(fig)
new_pos = xfm(fig.legends[0].legendPatch.get_extents())
assert (new_pos < old_pos).all()
assert fig.legends[0].get_title().get_text() == new_title
def test_move_legend_grid_object(long_df):
from seaborn.axisgrid import FacetGrid
hue_var = "a"
g = FacetGrid(long_df, hue=hue_var)
g.map(plt.plot, "x", "y")
g.add_legend()
_draw_figure(g.figure)
xfm = g.figure.transFigure.inverted().transform
old_pos = xfm(g.legend.legendPatch.get_extents())
fontsize = 20
utils.move_legend(g, "lower left", title_fontsize=fontsize)
_draw_figure(g.figure)
new_pos = xfm(g.legend.legendPatch.get_extents())
assert (new_pos < old_pos).all()
assert g.legend.get_title().get_text() == hue_var
assert g.legend.get_title().get_size() == fontsize
assert g.legend.legendHandles
for i, h in enumerate(g.legend.legendHandles):
assert mpl.colors.to_rgb(h.get_color()) == mpl.colors.to_rgb(f"C{i}")
def test_move_legend_input_checks():
ax = plt.figure().subplots()
with pytest.raises(TypeError):
utils.move_legend(ax.xaxis, "best")
with pytest.raises(ValueError):
utils.move_legend(ax, "best")
with pytest.raises(ValueError):
utils.move_legend(ax.figure, "best")
def check_load_dataset(name):
ds = load_dataset(name, cache=False)
assert isinstance(ds, pd.DataFrame)
def check_load_cached_dataset(name):
# Test the caching using a temporary file.
with tempfile.TemporaryDirectory() as tmpdir:
# download and cache
ds = load_dataset(name, cache=True, data_home=tmpdir)
# use cached version
ds2 = load_dataset(name, cache=True, data_home=tmpdir)
assert_frame_equal(ds, ds2)
@_network(url="https://github.com/mwaskom/seaborn-data")
def test_get_dataset_names():
names = get_dataset_names()
assert names
assert "tips" in names
@_network(url="https://github.com/mwaskom/seaborn-data")
def test_load_datasets():
# Heavy test to verify that we can load all available datasets
for name in get_dataset_names():
# unfortunately @network somehow obscures this generator so it
# does not get in effect, so we need to call explicitly
# yield check_load_dataset, name
check_load_dataset(name)
@_network(url="https://github.com/mwaskom/seaborn-data")
def test_load_dataset_string_error():
name = "bad_name"
err = f"'{name}' is not one of the example datasets."
with pytest.raises(ValueError, match=err):
load_dataset(name)
def test_load_dataset_passed_data_error():
df = pd.DataFrame()
err = "This function accepts only strings"
with pytest.raises(TypeError, match=err):
load_dataset(df)
@_network(url="https://github.com/mwaskom/seaborn-data")
def test_load_cached_datasets():
# Heavy test to verify that we can load all available datasets
for name in get_dataset_names():
# unfortunately @network somehow obscures this generator so it
# does not get in effect, so we need to call explicitly
# yield check_load_dataset, name
check_load_cached_dataset(name)
def test_relative_luminance():
"""Test relative luminance."""
out1 = utils.relative_luminance("white")
assert out1 == 1
out2 = utils.relative_luminance("#000000")
assert out2 == 0
out3 = utils.relative_luminance((.25, .5, .75))
assert out3 == pytest.approx(0.201624536)
rgbs = mpl.cm.RdBu(np.linspace(0, 1, 10))
lums1 = [utils.relative_luminance(rgb) for rgb in rgbs]
lums2 = utils.relative_luminance(rgbs)
for lum1, lum2 in zip(lums1, lums2):
assert lum1 == pytest.approx(lum2)
@pytest.mark.parametrize(
"cycler,result",
[
(cycler(color=["y"]), ["y"]),
(cycler(color=["k"]), ["k"]),
(cycler(color=["k", "y"]), ["k", "y"]),
(cycler(color=["y", "k"]), ["y", "k"]),
(cycler(color=["b", "r"]), ["b", "r"]),
(cycler(color=["r", "b"]), ["r", "b"]),
(cycler(lw=[1, 2]), [".15"]), # no color in cycle
],
)
def test_get_color_cycle(cycler, result):
with mpl.rc_context(rc={"axes.prop_cycle": cycler}):
assert get_color_cycle() == result
def test_remove_na():
a_array = np.array([1, 2, np.nan, 3])
a_array_rm = remove_na(a_array)
assert_array_equal(a_array_rm, np.array([1, 2, 3]))
a_series = pd.Series([1, 2, np.nan, 3])
a_series_rm = remove_na(a_series)
assert_series_equal(a_series_rm, pd.Series([1., 2, 3], [0, 1, 3]))
def test_assign_default_kwargs():
def f(a, b, c, d):
pass
def g(c=1, d=2):
pass
kws = {"c": 3}
kws = _assign_default_kwargs(kws, f, g)
assert kws == {"c": 3, "d": 2}
def test_draw_figure():
f, ax = plt.subplots()
ax.plot(["a", "b", "c"], [1, 2, 3])
_draw_figure(f)
assert not f.stale
# ticklabels are not populated until a draw, but this may change
assert ax.get_xticklabels()[0].get_text() == "a"
def test_deprecate_ci():
msg = "\n\nThe `ci` parameter is deprecated. Use `errorbar="
with pytest.warns(FutureWarning, match=msg + "None"):
out = _deprecate_ci(None, None)
assert out is None
with pytest.warns(FutureWarning, match=msg + "'sd'"):
out = _deprecate_ci(None, "sd")
assert out == "sd"
with pytest.warns(FutureWarning, match=msg + r"\('ci', 68\)"):
out = _deprecate_ci(None, 68)
assert out == ("ci", 68)
|