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Source: seaview
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 10),
libfltk1.3-dev,
libpng-dev,
libxft-dev,
libxext-dev,
libxinerama-dev,
zlib1g-dev
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/seaview.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/seaview.git
Homepage: http://doua.prabi.fr/software/seaview
Package: seaview
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: clustalo,
muscle,
phyml
Description: Multiplatform interface for sequence alignment and phylogeny
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal
Omega for multiple sequence alignment, and also allows one to use any external
alignment algorithm able to read and write FASTA-formatted files. It computes
phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or
by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic
trees on screen or PostScript files, and allows one to download sequences from
EMBL/GenBank/UniProt using the Internet.
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